Microsatellite analysis of genetic diversity in fragmented South African buffalo populations

Animal Conservation

Volumn 1, Issue 2, 1998, Pages 85-94

  O'Ryan, Colleen ^a   Harley, Eric H ^a   Bruford, Michael W ^b   Beaumont, Mark ^b   Wayne, Robert K ^c   Cherry, Michael I ^d  

^a UNIVERSITY OF CAPE TOWN   (South Africa)

^b INSTITUTE OF ZOOLOGY   (United Kingdom)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d STELLENBOSCH UNIVERSITY   (South Africa)

Author keywords

[No Author keywords available]

Indexed keywords

BUBALUS; SYNCERUS CAFFER;

EID: 0002231128     PISSN: 13679430     EISSN: None     Source Type: Journal    
DOI: 10.1017/S136794309800002X     Document Type: Article

References (30)

1. Altmann, J., Alberts, S. C., Haines, S. A., Dubach, J., Muruthi, P., Coote, T., Geffen, E., Cheeseman, D. J., Mututua, R. S., Saiyalel, S. N., Wayne, R. K., Lacy, R. C. & Bruford, M. W. (1996). Behaviour predicts genetic structure in a wild primate group. Proc. Natl. Acad. Sci. USA 93: 5797-5801.
2. Barendse, W., Aritage, S. M., Kossarek, L. M., Shalom, A., Kirkpatrick, B. W., Ryan, A. M., Clayton, D., Li, L., Neibergs, H. L., Zhang, N., Grosse, W. M., Weiss, J., Creighton, P., McCarthy, F., Ron, M., Teal, A. J., Fries, R., McGraw, R. A., Moore, S. S., Goerges, M., Soller, M., Womack, J. E. & Hetzel, D. J. S. (1994). A genetic linkage map of the bovine genome. Nature Genet. 6: 227-235.
3. Balding, D. J. & Nichols, R. A. (1995). A method for quantifying differentiation between populations at multi-allelic loci and its implications for investigating identity and paternity. Genetica 96: 3-12.
4. Beaumont, M. A. & Nichols, R. A. (1996). Evaluating loci for use in the genetic analysis of population structure. Proc. R. Soc. Lond. B 263: 1691-1626.
5. Bruford, M. W. & Wayne R. K. (1993). Microsatellites and their application to population genetic studies. Curr. Opin. Genet. Dev. 3: 939-943.
6. Crow, J. F. & Kimura, M. (1970). An introduction to population genetics theory. New York: Harper and Row.
7. Fries, R., Eggen, A. & Womack, J. E. (1993). The bovine genome map. Mamm. Genome 4: 405-428.
8. Goldstein, D. B., Linares, A. R., Cavalli-Sforza, L. L. & Feldman, M. W. (1995). Genetic absolute dating based on microsatellites and the origin of modern humans. Proc. Natl. Acad. Sci. USA 92: 6723-6727.
9. Gotelli, D., Sillero-Zubiri, C., Applebaum, G. D., Roy, M. S., Girman, D. J., Garcia-Moreno, J., Ostrasander, E. O. & Wayne, R. K. (1994). Molecular genetics of the most endangered canid: the Ethiopian wolf Canis simensis. Mol. Ecol. 3: 301-312.
10. Griffiths, R. C. & Tavaré, S. (1994a). Simulating probability-distributions in the coalescent. Theor. Popul. Biol. 46: 131-159.
11. Griffiths, R. C. & Tavaré, S. (1994b). Sampling theory for neutral alleles in a varying environment. Philos. Trans. R. Soc. Lond. B 344: 403-410.
12. Griffiths, R. C. & Tavaré, S. (1994c). Ancestral inference in population genetics. Stat. Sci. 9: 307-319.
13. Kimura, M. & Crow, J. F. (1964). The number of alleles that can be maintained in a finite population. Genetics 49: 725-738.
14. Kooperberg, C. & Stone, C. J. (1991). A study of logspline density estimation. Comp. Stat. Data. Anal. 12: 327-347.
15. Lande, R. & Barrowclough, G. F. (1987). Viable populations for conservation. In Effective population size, genetic variation and their use in population management: 87-123. Soulé, M. E. (Ed.). Cambridge: Cambridge University Press.
16. Ohta, T. & Kimura, M. (1973). Model of mutation appropriate to estimate number of electrophoretically detectable alleles in a finite population. Genet. Res. 22: 201-204.
17. Paetkau, D., Calvert, W., Stirling, I. & Stobeck, C. (1995). Microsatellite analysis of population structure in Canadian polar bear. Mol Ecol. 4: 347-354.
18. Queller, D. C., Strassman, J. E. & Hughes, C. R. (1993). Microsatellites and kinship. Trends Ecol. Evol. 8: 285-288.
19. Rannala, B. & Hartigan, J. A. (1995). Estimating gene flow in island populations. Genet Res. 67: 147-158.
20. Raymond, M. & Rousset, F. (1995). GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J. Hered. 86: 248-249.
21. Ross, S. (1976). A first course in probability. New York: Macmillan.
22. Roy, M. S., Geffen, E., Smith, D., Ostrander, E. A. & Wayne, R. K. (1994). Patterns of differentiation and hybridisation in North American wolf-like canids revealed by analysis of microsatellite loci. Mol. Biol. Evol. 11: 553-570.
23. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular cloning: a laboratory manual: 9.16-18 and 5.68-5.70. (2nd edn). Cold Spring Harbor: Cold Spring Harbor Laboratory Press.
24. Sinclair, A. R. E. (1977). The African buffalo: a study of resource limitation of populations: 101-155. Chicago: University of Chicago Press.
25. Slatkin, M. (1995). A measure of population subdivision based on microsatellite allele frequencies. Genetics 139: 457-463.
26. Slatkin, M. & Barton, N. H. (1989). A comparison of three indirect methods for estimating average levels of gene flow. Evolution 43: 1349-1368.
27. Smithers, R. H. E. (1983). The mammals of the Southern African Subregion: 663-666. Pretoria: University of Pretoria.
28. Tanner, M. A. (1993). Tools for statistical inference. New York: Springer-Verlag.
29. Weir, B. S. (1996). Genetic data analysis. Sunderland: Sinauer.
30. Wright, S. (1969). Evolution and the genetics of populations. Vol. 2. Chicago and London: University of Chicago Press.