Vers une compréhension des virus comme systèmes complexes et dynamiques

Annales de Medecine Veterinaire

Volumn 143, Issue 4, 1999, Pages 225-235

  Domingo, Esteban ^a  

^a UNIVERSIDAD AUTÓNOMA DE MADRID   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0001994216     PISSN: 00034118     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (74)

1. BARANOWSKI E., SEVILLA N., VERDAGUER N., RUIZ-JARABO C.M., BECK E., DOMINGO E. Multiple virulence determinants of foot-and-mouth disease virus in cell culture. J. Virol., 1998, 72, 6362-6372.
2. BATSCHELET E., DOMINGO E., WEISSMANN C. The proportion of revertant and mutant phage in a growing population, as a function of mutation and growth rate. Gene, 1976, 1, 27-32.
3. 3) inhibit binding and infection of foot-and-mouth disease virus to cultured cells. J. Virol., 1995, 69, 2664-2666.
4. BJÖRNDAL A., DENG H., JANSSON M., FIORE J.R., COLOGNESI C., KARLSSON A., ALBERT J., SCARLATTI G., LITTMAN D.R., FENYO E.M. Correceptor usage of primary human immunodeficiency virus type 1 isolates varies according to biological phenotype. J. Virol., 1997, 71, 7478-7487.
5. BORROW P., LEWICKI H., WEI X.P., HORWITZ M.S., PFEFFER N., MEYERS H., NELSON J.A., GAIRIN J.E., HAHN B.H., OLDSTONE M.B.A., SHAW G.M. Antiviral pressure exerted by HIV-1 specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus. Nature Med., 1997, 3, 205-211.
6. CAIRNS J., STENT G.S., WATSON J.D. Phage and the Origins of Molecular Biology (Expanded Edition). Cold Spring Harbor Laboratory Press, New York, 1992.
7. CLEMENTS J.E., GDOVIN S.L., MONTELARO S.C., NARAYAN O. Antigenic variation in lentiviral diseases. Annu. Rev. Immunol. 1988, 6, 139-159.
8. DE JONG J.J., GOUDSMIT J., KEULEN W., KLAVER B., KRONE W., TERSMETTE M., DE RONDE A. Human immunodeficiency virus type 1 clones chimeric for the envelope V3 domain differ in syncytium formation and replication capacity. J. Virol., 1992, 66, 757-765.
9. 32P-labeled RNA. Anal. Biochem., 1972, 49, 184-197.
10. DOMINGO E. RNA virus evolution and the control of viral disease. In: Progress in Drug Research. Jucker E. (Ed.) vol. 33. Birkhauser Verlag, Basel, 1989, 93-133.
11. DOMINGO E. Biological significance of viral quasispecies. Viral Hepatitis Reviews, 1996, 2, 247-261.
12. DOMINGO E. Quasispecies and the implications for viral persistence and escape. Clinical and Diagnostic Virology, 1998, 10, 97-101.
13. DOMINGO E. Quasispecies. In: Encyclopedia of Virology, Second Edition. Granoff A., Webster R.G. (Eds.) Academic Press, London, 1999, sous presse.
14. DOMINGO E., FLAVELL R.A., WEISSMANN C. In vitro site-directed mutagenesis: Generation and properties of an infectious extracistronic mutant of bacteriophage Qß. Gene, 1976, 1, 3-25.
15. DOMINGO E., SABO D.L., TANIGUCHI T., WEISSMANN C. Nucleotide sequence heterogeneity of an RNA phage population. Cell, 1978, 13, 735-744.
16. DOMINGO E., DÁVILA M., ORTÍN J. Nucleotide sequence heterogeneity of the RNA from a natural population of foot-and-mouth disease virus. Gene, 1980, 11, 333-346.
17. DOMINGO E., MARTÍNEZ-SALAS E., SOBRINO F., DE LA TORRE J.C., PORTELA A., ORTÍN J., LÓPEZ-GALÍNDEZ C., PÉREZ-BREÑA P., VILLANUEVA N., NÁJERA R., VANDEPOL S., STEINHAUER D., DEPOLO N., HOLLAND J.J. The quasispecies (extremely heterogeneous) nature of viral RNA genome population: biological relevance-a review. Gene, 1985, 40, 1-8.
18. DOMINGO E., HOLLAND J. High error rates, population equilibrium, and evolution of RNA replication systems. In: RNA Genetics, vol. 3. Domingo E., Holland J., Ahlquist P. (Eds.), CRC Press Inc. Florida, 1988, 3-36.
19. DOMINGO E., HOLLAND J.J., AHLQUIST, P. RNA Genetics, vols. 1, 2, 3. CRC Press Inc., Boca Raton, Florida, 1988.
20. DOMINGO E., HOLLAND J.J. Complications of RNA heterogeneity for the engineering of virus vaccines and antiviral agents. In: Genetic Engineering, Principles and Methods. Setlow J.K. (Ed.). Plenum Press, 1992, 14, 13-32,.
21. DOMINGO E., HOLLAND J.J. Mutation rates and rapid evolution of RNA viruses. Evolutionary Biology of viruses, S. S. Morse, ed., Raven Press, New York, 1994, 161-184.
22. DOMINGO E., HOLLAND J.J., BIEBRICHER C., EIGEN M. Quasispecies: The concept and the word. In: Molecular Basis of Virus Evolution. Gibbs A., Calisher C., García-Arenal F. (Eds.). Cambridge University Press, 1995, 171-180.
23. DOMINGO E., HOLLAND J.J. RNA virus mutations and fitness for survival. Annu. Rev. Microbiol., 1997, 51, 151-178.
24. DOMINGO E., MENÉNDEZ-ARIAS L., QUIÑONES-MATEU M.E., HOLGUÍN A., GUTIERREZ-RIVAS M., MARTÍNEZ M.A., QUER J., NOVELLA I.S., HOLLAND J.J. Viral quasispecies and the problem of vaccine-escape and drug-resistant mutants. Prog. Drug Res., 1997, 48, 99-128.
25. DOMINGO E., BARANOWSKI E., RUIZ-JARABO C.M., MARTÍN-HERNÁNDEZ A.M., SÁIZ J.C., ESCARMÍS C. Quasispecies structure and persistence of RNA viruses. Emerg. Infect. Dis., 1998, 4, 521-527.
26. DOMINGO E., ESCARMÍS C., MENÉNDEZ-ARIAS L., HOLLAND J.J. Viral quasispecies and fitness variations. In: Origin and Evolution of Viruses. Domingo E., Webster R.G., Holland J.J. (Eds.), Academic Press, London, 1999, 141-161.
27. DRAKE J.W. Rates of spontaneous mutations among RNA viruses. Proc. Natl. Acad. Sci. USA, 1993, 90, 4171-4175.
28. DUARTE E.A., NOVELLA I.S., WEAVER S.C., DOMINGO E., WAIN-HOBSON S., CLARKE D.K., MOYA A., ELENA S.F., DE LA TORRE J.C., HOLLAND J.J. RNA virus quasispecies: Significance for viral disease and epidemiology. Infect. Ag. Dis., 1994, 3, 201-214.
29. EIGEN M. Self-organization of matter and the evolution of biological macromolecules. Naturwissenschaften, 1971, 58, 465-523.
30. EIGEN M. Steps Towards Life. Oxford University Press, Oxford, 1992.
31. EIGEN M. On the nature of viral quasispecies. Trends Microbiol., 1996, 4, 212-214.
32. EIGEN M., SCHUSTER P. The Hypercycle. A Principle of Natural Self-Organization. Springer, Berlin, 1979.
33. EIGEN M., BIEBRICHER C. Sequence space and quasispecies distribution. In: RNA Genetics, vol. 3. Domingo E., Holland J.J., Ahlquist P. (Eds.), CRC Press Inc., Boca Raton, Florida 1988, 211-245.
34. FRAENKEL-CONRAT H., KIMBALL P.C. Virology. Prentice-Hall Inc., Englewood Cliffs, New Jersey, 1982.
35. GIBBS A., CALISHER C.H., GARCÍA-ARENAL F. (Eds.). Molecular basis of Virus Evolution. Cambridge University Press, Cambridge, 1995.
36. GRIMALIA R.J., FULLER B.A., RENNERT P.D., NELSON M.B., HAMMARSKJÖLD M.L., POTTS B., MURRAY M., PUTNEY S.D., GRAY G. Mutations in the principal neutralization determinant of human immunodeficiency virus type 1 affect syncytium formation, virus infectivity, growth kinetics, and neutralization. J. Virol., 1992, 66, 1875-1883.
37. HAMMER S.M., KATZENSTEIN D.A., HUGHES M.D., GUNDACKER H., SCHOOLEY R.T., HAUBRICH R.H., HENRY W.K., LEDERMAN M.M., PHAIR J.P., NIU M., HIRSCH M.S., MERIGAN T.C. A trial comparing nucleoside monotherapy with combination therapy in HIV-infected adults with CD4 cell counts from 200 to 500 per cubic millimeter. AIDS Clinical Trial Group Study 175 Study Team. N. Engl. J. Med., 1996, 335, 1081-1090.
38. HO D.D. Toward HIV eradication or remission: the tasks ahead. Science, 1998, 280, 1866-1867.
39. HOLLAND J.J. (Ed.). Genetic diversity of RNA viruses. In: Current Topics in Microbiology and Immunology, vol. 176. Springer-Verlag, New York, 1992.
40. HOLLAND J.J., SPINDLER K., HORODYSKI F., GRABAU E., NICHOL S., VANDEPOL S. Rapid evolution of RNA genomes. Science, 1982, 215, 1577-1585.
41. HOLLAND J.J., DOMINGO E., DE LA TORRE J.C., STEINHAUER D.A. Mutation frequencies at defined single codon sites in vesicular stomatitis virus and poliovirus can be increased only slightly by chemical mutagenesis. J. Virol., 1990, 64, 3960-3962.
42. HOLLAND J.J., DE LA TORRE J.C., STEINHAUER D. RNA virus population as quasispecies. Curr. Top. Microbiol. Immunol., 1992, 176, 1-20.
43. HWANG S.S., BOYLE T.T., LYERLY H.K., CULLEN B.R. Identification of the envelope V3 loop as the primary determinant of cell tropism in HIV-1. Science, 1991, 253, 71-74.
44. ISNARD M., GRANIER M., FRUTOS R., REYNAUD B., PETERSCHMITT M. Quasispecies nature of three maize streak virus isolates obtained through different modes of selection from a population used to assess responses to infection of maize cultivars. J. Gen. Virol., 1998, 79, 3091-3099.
45. JACKSON T., ELLARD F.M., ABU GHAZALEH R., BROOKES S.M., BLAKEMORE W.E., CROTEYN A.H., STUART D.I., NEWMAN J.W.I., KING A.M.Q. Efficient infection of cells in culture by type O foot-and-mouth disease virus requires binding to cell surface heparan sulfate. J. Virol., 1996, 70, 5282-5287.
46. JI J., HOFFMANN J.-S., LOEB L. Mutagenicity and pausing of HIV reverse transcriptase during HIV plus-strand DNA synthesis. Nucleic Acids Res., 1994, 22, 47-52.
47. KOENIG S., CONLEY A.J., BREWAH Y.A., JONES G.M., LEATH S., BOOTS L.J., DAVEY V., PANTALEO G., DEMAREST J.F., CARTER C., WANNEBO C., YANELLI J.R., ROSENBERG S.A., LANE H.C. Transfer of HIV-1-specific cytotoxic T lymphocytes to an AIDS patients leads to selection for mutant HIV variants and subsequent disease progression. Nature Med., 1995, 1, 330-336.
48. LEDERBERG J. Viruses and humankind: Intracellular symbiosis and evolutionary competition. In: Emerging Viruses, Morse S.S. (Ed.), Oxford University Press, Oxford 1993, 3-9.
49. LOEB L.A., ESSIGMANN J.M., KAZAZI F., ZHANG J., ROSE K.D., MULLINS J.I. Lethal mutagenesis of HIV with mutagenic nucleoside analogs. Proc. Natl. Acad. Sci. USA, 1999, 96, 1492-1497.
50. LOEFFLER F., FROSCH P. Berichte der Komission zur Erforschung der Maul-und Klauenseuche bei dem Institut für Infektionskrankheiten in Berlin. Zentralblatt für Bakteriologie, Parasitenkunde und Infektionskrankheiten. Part I, 1898, 23, 371-391.
51. MARCUS P.I., RODRIGUES L.L., SEKELLICK M.J. Interferon induction as a quasispecies marker of vesicular stomatitis virus populations. J. Virol., 1998, 72, 542-549.
52. MAYR E. Evolution and the Diversity of Life. Harvard University Press, Cambridge, Massachusetts, 1959.
53. McMICHAEL A.J., PHILLIPS R.E. Escape of human immunodeficiency virus from immune control. Annu. Rev. Immunol., 1997, 15, 271-296.
54. MORSE S.S. (Ed.). Emerging Viruses. Oxford University Press, Oxford, 1993.
55. MORSE S.S. (Ed.). The Evolutionary Biology of Viruses. Raven Press, New York, 1994.
56. MORTARA L., LETOURNEUR F., GRAS-MASSE H., VENET A., GULLET J.G., BOURGAULT-VILLADA I. Selection of virus variants and emergence of virus escape mutants after immunization with an epitope vaccine. J. Virol., 1998, 72, 1403-1410.
57. NOVELLA I.S., DOMINGO E., HOLLAND J.J. Rapid viral quasispecies evolution: implications for vaccine and drug strategies. Mol. Med. Today, 1995, 1, 248-253.
58. NOWAK M.A. What is a quasispecies? Trends Ecol. Evol., 1992, 7, 118-121.
59. OLDSTONE M.B.A. Viruses, plagues and history. Oxford University Press, New York, Oxford, 1998.
60. PAWLOTSKY J.-M., GERMANIDIS G., NEUMANN A.U., PELLERIN M., FRAINAIS P.-O., DHUMEAUX D. Interferon resistance of hepatitis C virus genotype 1b: Relationship to nonstructural 5A quasispecies mutations. J. Virol., 1998, 72, 2795-2805.
61. PRICE D.A., GOULDER P.J.R., KLENERMAN P., SEWELL A.K., EASTERBROOK P.J. TROOP M., BANHAM C.R.M., PHILLIPS R.E. Positive selection of HIV-1 cytotoxic T lymphocyte escape variants during primary infection. Proc. Natl. Acad. Sci. USA, 1997, 94, 1890-1895.
62. RIDLEY M. (Ed.). Evolution. Oxford University Press, Oxford. 1997.
63. ROWE C.L., BAKER S.C., NATHAN M.J., FLEMING J.O. Evolution of mouse hepatitis virus: detection and characterization of spike deletion variants during persistent infection. J. Virol., 1997, 71, 2959-2969.
64. SA-CARVALHO D., RIEDER E., BAXT B., RODARTE R., TANURI A., MASON P. Tissue culture adaptation of foot-and-mouth disease virus selects viruses that bind to heparin and are attenuated in cattle. J. Virol., 1997, 71, 5115-5123.
65. SCHUITEMAKER H., KOOT M., KOOTSTRA M.A., DERCKSEN M.W., DE GOEDE R.E.Y., VAN STEENWIJK R.P., LANGE J.M.A., SCHATTENKERK J.K.M.E., MIEDEMA F., TERSMETTE M. Biological phenotype of human immunodeficiency type-1 clones at different stages of infection-progression of disease is associated with a shift from monocytotropic to T-cell tropic virus populations. J. Virol., 1992, 66, 1354-1360.
66. SOBRINO F., DÁVILA M., ORTÍN J., DOMINGO E. Multiple genetic variants arise in the course of replication of foot-and-mouth disease virus in cell culture. Virology, 1983, 128, 310-318.
67. SPECK R.F., WEHRLY K., PLATT E.J., ATCHISON R.E., CHARO I.F., KABAT D., CHESEBRO B., GOLDSMITH M.A. Selective employment of chemokine receptors as human immunodeficiency virus type 1 correceptors determined by individual amino acids within the envelope V3 loop. J. Virol., 1997, 71, 7136-3139.
68. SWETINA J., SCHUSTER P. Self-replication with error - a model for polynucleotide replication. Biophys. Chem., 1982, 16, 329-345.
69. TABOGA O., TAMI C., CARRILLO E., NÚÑEZ J.I., RODRÍGUEZ A., SAIZ J.C., BLANCO E., VALERO M.-L., ROIG X., CAMARERO J.A., ANDREU D., MATEU M.G., GIRALT E., DOMINGO E., SOBRINO F., PALMA E.L. A large scale evaluation of peptide vaccines against foot-and-mouth disease: lack of solid protection in cattle and isolation of escape mutants. J. Virol., 1997, 71, 2606-2614.
70. WANG W.K., DUDEK T., ZHAO, Y.J., BRUMBLAY H.G., ESSEX M., LEE T.H. CCR5 coreceptor utilization involves a highly conserved arginine residue of HIV type 1 gp120. Proc. Natl. Acad. Sci. USA, 1998, 95, 5740-5745.
71. WEBSTER R.G., LAVER W.G., AIR G.M., SCHILD G.C. Molecular mechanisms of variation in influenza viruses. Nature, 1982, 296, 115-121.
72. WEIDT G., DEPPERT W., UTERMÖHLEN O., HENKESHOVEN J., LEHMAN-GRUBE F. Emergence of virus escape mutants after immunization with epitope vaccines. J. Virol., 1995, 69, 7147-7151.
73. WEINER A., ERICKSON A.L., KANSOPON J., CRAWFORD K., MUCHMORE E., HUGHES A.L., HOUGHTON M., WALKER C.M. Persistent hepatitis C virus infection in a chimpanzee is associated with emergence of a cytotoxic T lymphocyte escape variatn. Proc. Natl. Acad. Sci. USA, 1995, 92, 2755-2759.
74. WYATT C.A., ANDRUS L., BROTMAN B., HUANG F., LEE D.-H., PRINCE A.M. Immunity in chimpanzees chronically infected with hepatitis C virus: Role of minor quasispecies in reinfection. J. Virol., 1998, 72, 1725-1730.