Structure of a bovine thrombin-Hirudin51-65 complex determined by a combination of molecular replacement and graphics. Incorporation of known structural information in molecular replacement

Acta Crystallographica Section D: Biological Crystallography

Volumn 52, Issue 3, 1996, Pages 453-464

  Vitali, Jacqueline ^a   Martin, Philip D ^a   Malkowski, Michael G ^a   Olsen, Cris M ^b   Johnson, Paul H ^b,c   Edwards, Brian F P ^a  

^a WAYNE STATE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b SRI INTERNATIONAL   (United States)

^c BAYER AG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BOVINAE;

EID: 0001631472     PISSN: 09074449     EISSN: None     Source Type: Journal    
DOI: 10.1107/S0907444996000364     Document Type: Article

References (59)

1. Abola, E. E., Bernstein, F. C., Bryant, S. H., Koetzle, T. F. & Wang (1987). Crystallographic Databases, Information Content, Software Systems, Scientific Application, edited by F. H. Allen, G. Bergerhoff & R. Sievers, pp. 107-132. Cambridge/Chester: IUCr.
2. Banner, D. W. & Hadvary, P. (1991). J. Biol. Chem. 266, 20085-20093.
3. Bode, W., Mayr, I., Baumann, U., Huber, R., Stone, S. R. & Hofsteenge, J. (1989). EMBO J. 8, 3467-3475.
4. Bourdon, P., Jablonski, J.-A., Chao, B. H. & Maraganore, J. M. (1991). FEBS Lett. 294, 163-166.
5. Brünger, A. T. (1988). J. Mol. Biol. 203, 803-816.
6. Brünger, A. T. (1990). Acta Cryst. A46, 46-57.
7. Burley, S. K. & Petsko, G. A. (1985). Science, 229, 23-28.
8. Butkowski, R. J., Elion, J., Downing, M. R. & Mann, K. G. (1977). J. Biol. Sci. 252, 4942-4957.
9. Cambillau, C. & Horjales, E. (1987). J. Mol. Graphics, 5, 174-177.
10. Clore, G. M., Sukermaran, D. K., Nilges, M., Zarbock, J. & Gronenborn, A. M. (1987). EMBO J. 6, 529-539.
11. Coughlin, S. R. (1994). Trends Cardiovascular Med. 4, 77-83.
12. Dao-Pin, S., Sauer, U., Nicholson, H. & Matthews, B. W. (1991). Biochemistry, 30, 7142-7153.
13. Davie, E. W., Fujikawa, K. & Kisiel, W. (1991). Biochemistry, 30, 10363-10370.
14. Degan, S. J. F., MacGillivray, R. T. A. & Davie, E. W. (1983). Biochemistry, 22, 2087-2097.
15. DiMaio, J., Gibbs, B., Munn, D., Lefebvre, J., Ni, F. & Konishi, Y. (1990). J. Biol. Chem. 265, 21698-21703.
16. Dittman, W. A. & Majerus, P. W. (1990). Blood, 75, 329-336.
17. Dodt, J., Kohler, S. & Baici, A. (1988). FEBS Lett. 229, 87-90.
18. Dodt, J., Kohler, S., Schmitz, T. & Wilhelm, B. (1990). J. Biol. Chem. 265, 713-718.
19. Engh, R. A. & Huber, R. (1991). Acta Cryst. A47, 392-400.
20. Esmon, C.T. (1987). Science, 235, 1348-1352.
21. Fenton, J. W. II. (1981). Ann. NY Acad Sci. 370, 468-495.
22. Fenton, J. W. II. (1986). Ann. NY Acad. Sci. 485, 5-15.
23. Folkers, P. J. M., Clore, G. M., Driscoll, P. C., Dodt, J., Kohler, S. & Gronenborn, A. M. (1989). Biochemistry, 28, 2601-2617.
24. Furey, W., Wang, B. C. & Sax, M. (1982). J. Appl. Cryst. 15, 160-166.
25. Grütter, M. G., Priestle, J. P., Rahuel, J., Grossenbacher, H., Bode, W, Hofsteenge, J. & Stone, S. R. (1990). EMBO J. 9, 2361-2365.
26. Haruyama, H. & Wüthrich, K. (1989). Biochemistry, 28, 4301-4312.
27. Howard, A. J., Gilliland, G. L., Finzel, B. C., Poulos, T. L., Ohlendorf, D. H. & Salemme, F. R. (1987). J. Appl. Cryst. 20, 383-387.
28. Johnson, P. H., Sse, P., Winant, R., Hudson, D., Underhill, P., Lazar, J. B, Olsen, C. & Almquist, R. (1991). Haemostasis, 21, 41-48.
29. Jones, T. A. (1985). Methods Enzymol. 115, 157-171.
30. Karshikov, A., Bode, W., Tulinsky, A. & Stone, S. R. (1992). Protein Sci. 1, 727-735.
31. Laskowski, R. A. MacArthur, M. W. & Thornton, J. M. (1994). Evaluation of Protein Coordinate Sets. In From First Map to Final Model, edited by S. Bailey, R. Hubbard, & D. A. Waller, pp. 149-159. Warrington: Daresbury Laboratory.
32. MacGillivray, R. T. A. & Davie, E. W. (1984). Biochemistry, 23, 1626-1634.
33. Magnusson, S., Petersen, T. E., Sottrup-Jensen, L. & Claeys, H. (1975). Proteases and Biological Control, edited by E. Reich, D. B. Rifkin & E. Shaw, pp. 123-149. Cold Spring Harbor Laboratory Press.
34. Mann, K. G. (1987). Trends Biochem. Sci. 12, 229-233.
35. Maraganore, J. M., Bourdon, P., Jablonski, J., Ramachandran, K. L. & Fenton, J. W., II (1990). Biochemistry, 29, 7095-7101.
36. Maraganore, J. M., Chao, B., Joseph, K. L., Jablonski, J. & Ramachandran, K. L. (1989). J. Biol. Chem. 264, 8692-8698.
37. Markwardt, F. (1970). Methods Enzymol. 19, 924-932.
38. Martin, P. D., Kumar, V. K., Tsernoglou, D. & Edwards, B. F. P. (1983). Fed. Proc. 42, 1861.
39. Maryanoff, B. E., Qiu, X., Padmanabhan, K. P., Tulinsky, A., Almond H. R., Andrade-Gordon, P., Greco, M. N., Kauffman, J A., Nicolaou, K. C., Liu, A., Brungs, P. H., & Fusetani, N. (1993). Proc. Natl Acad. Sci. USA, 90, 8048-8052.
40. Priestle, J. P., Rahuel, J., Rink, H., Tones, M. & Grütter, M. G. (1993). Protein Sci. 2, 1630-1642.
41. Qiu, X., Padmanabhan, K. P., Carperos, V. E., Tulinsky, A., Kline, T., Maraganore, J. M. & Fenton, J. W. (1992). Biochemistry, 31, 11689-11697.
42. Read, R. J. (1986). Acta Cryst. A42, 140-149.
43. Rossman, M. G. & Blow, D. M. (1962). Acta Cryst. 15, 24-31.
44. Rydel, T. J., Ravichandran, K. G., Tulinsky, A., Bode, W., Huber, R., Roitsch, C. & Fenton, J. W. (1990). Science, 249, 277-290.
45. Rydel, T. J., Tulinsky, A, Bode, W. & Huber, R. (1991). J. Mol. Biol. 221, 583-601.
46. Sali, D., Bycroft, M. & Fersht, A. R. (1990). J. Mol. Biol. 220, 779-788.
47. Satow, Y., Cohen, G. H., Padlan, E. A. & Davies, D. R. (1986). J. Mol. Biol. 190, 593-604.
48. Skrzypczak-Jankun, E., Carperos, V. E., Ravichandran, K. G., Tulinsky, A, Westbrook, M. & Muraganore, J. M. (1991). J. Mol. Biol. 221, 1379-1393.
49. Stone, S. R., Braun, P. J. & Hofsteenge, J. (1987). Biochemistry, 26, 4617-4624.
50. Stone, S. R., Betz, A., Parry, M. A. A., Jackman, M. P. & Hofsteenge, J. (1993). Exp. Med. Biol. 340, 35-49.
51. Stubbs, M. T., Oschkinat, H., Mayr, I., Huber, R, Angliker, H., Stone, S. R. & Bode, W. (1992). Eur. J. Biochem. 206, 187-195.
52. Vijayalakshmi, J., Padmanabhan, K. P., Mann, K. G. & Tulinsky, A. (1994). Protein Sci. 3, 2254-2271.
53. Vitali, J., Martin, P. D., Malkowski, M. G., Robertson, W. D., Lazar, J. B, Winant, R. C., Johnson, P. H. & Edwards, B. F. P. (1992). J. Biol. Chem. 267, 17670-17678.
54. Walz, D. A., Hewett-Emmett, D. & Guillin, M.-C. (1986). Prothrombin and Other Vitamin K Proteins, edited by W. H. Seegers & D. A. Walz, Vol. 1, pp. 125-160. Boca Raton, FL: CRC Press.
55. Wu, T.-P., Yee, V., Tulinsky, A., Chrusciel, R. A., Nakanishi, H., Shen, R., Priebe, C. & Kahn, M. (1993). Protein Eng. 6, 471-478.
56. Yue, S.-Y., DiMaio, J., Szewczuk, Z., Purisima, E. O., Ni, F. & Konishi, Y. (1992). Protein Eng. 5, 77-85.
57. Zdanov, A., Wu., S., DiMaio, J., Konishi, Y., Li, Y., Wu, X., Edwards, B. F. P., Martin, P. D. & Cygler, M. (1993). Proteins Struct. Funct. Genet. 17, 252-265.
58. Zhang, K. Y. J. (1993). Acta Cryst. D49, 213-222.
59. Zhang, X.-J. & Matthews, B. W. (1994). Acta Cryst. D50, 675-686.