Mobility of NH bonds in DNA-binding protein HU of Bacillus stearothermophilus from reduced spectral density mapping analysis at multiple NMR fields

Journal of Biomolecular NMR

Volumn 11, Issue 3, 1998, Pages 265-277

  Vis, Hans ^a,c   Vorgias, Constantin E ^b,d   Wilson, Keith S ^b,e   Kaptein, Robert ^a   Boelens, Rolf ^a  

^a UTRECHT UNIVERSITY   (Netherlands)

^b EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^c UNIVERSITY OF OXFORD   (United Kingdom)

^d UNIVERSITY OF ATHENS   (Greece)

^e UNIVERSITY OF YORK   (United Kingdom)

Author keywords

DNA binding protein; Heteronuclear NMR relaxation; Model free approach; Protein dynamics; Rotational diffusion

Indexed keywords

GEOBACILLUS STEAROTHERMOPHILUS;

EID: 0001580250     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1008208615714     Document Type: Article

References (63)

1. Akke, M. and Palmer III, A.G. (1996) J. Am. Chem. Soc., 118, 911-912.
2. Brüschweiler, R., Liao, X. and Wright, P.E. (1995) Science, 268, 886-889.
3. Cavanagh, J., Palmer III, A.G., Wright, P.E. and Rance, M. (1991) J. Magn. Reson., 91, 429-436.
4. Clore, G.M., Bax, A., Driscoll, P.C., Wingfield, P.T. and Gronenborn, A.M. (1990a) Biochemistry, 29, 8172-8184.
5. Clore, G.M., Szabo, A., Bax, A., Kay, L.E., Driscoll, P.C. and Gronenborn, A.M. (1990b) J. Am. Chem. Soc., 112, 4989-4991.
6. Dayie, K.T. and Wagner, G. (1994) J. Magn. Reson., A111, 121-126.
7. Deverell, C., Morgan, R.E. and Strange, J.H. (1970) Mol. Phys., 18, 553-559.
8. Drlica, K. and Rouviere-Yaniv, J. (1987) Microbiol. Rev., 51, 301-319.
9. Echols, H. (1990) J. Biol. Chem., 265, 14697-14700.
10. Farrow, N.A., Zhang, O., Szabo, A., Torchia, D.A. and Kay, L.E. (1995) J. Biomol. NMR, 6, 153-162.
11. Flashner, Y. and Gralla, J.D. (1988) Cell, 54, 713-721.
12. Friedman, D.I. (1988) Cell, 55, 545-554.
13. Funnel, B., Baker, T. and Kornberg, A. (1987) J. Biol. Chem., 262, 10327-10334.
14. Geiduschek, E.P., Schneider, G.J. and Sayre, M.H. (1990) J. Struct. Biol., 104, 84-90.
15. Goodman, S., Yang, C., Nash, H., Sarai, A. and Jernigan, R. (1990) In Structure and Methods, Vol. 2 (Eds., Sarma, R.H. and Sarma, M.H.), Adenine Press, New York, NY, pp. 51-62.
16. Green, J.R. and Geiduschek, E.P. (1985) EMBO J., 4, 1345-1349.
17. Habazettl, J. and Wagner, G. (1995) J. Magn. Reson., B109, 100-104.
18. Härd, T., Sayre, M.H., Geiduschek, E.P. and Kearns, D.R. (1989) Biochemistry, 28, 2813-2819.
19. Hiyama, Y., Niu, C.H., Silverton, J.V., Bavoso, A. and Torchia, D.A. (1988) J. Am. Chem. Soc., 112, 4989-4991.
20. Ishima, R. and Nagayama, K. (1995) Biochemistry, 34, 3162-3171.
21. Johnson, R., Bruist, M. and Simon, M. (1986) Cell, 46, 531-539.
22. Kay, L.E., Torchia, D.A. and Bax, A. (1989) Biochemistry, 28, 8972-8979.
23. Kay, L.E., Keifer, P. and Saarinen, T. (1992) J. Am. Chem. Soc., 114, 10663-10665.
24. Keiter, E.A. (1986) Ph.D. Thesis, University of Illinois, Urbana-Champaign, IL.
25. Kinoshita, K., Kawato Jr., S. and Ikegami, A. (1977) Biophys. J., 20, 289-305.
26. Lammi, M., Paci, M. and Gualerzi, C.B. (1984) FEBS Lett., 170, 99-104.
27. Lavoie, B.D., Shaw, G.S., Millner, A. and Chaconas, G. (1996) Cell, 85, 761-771.
28. Lee, L.K., Rance, M., Chazin, W.J. and Palmer III, A.G. (1997) J. Biomol. NMR, 9, 287-298.
29. Lefèvre, J.F., Dayie, K.T., Peng, J.W. and Wagner, G. (1996) Biochemistry, 35, 2674-2686.
30. Lipari, G. and Szabo, A. (1982a) J. Am. Chem. Soc., 104, 4546-4559.
31. Lipari, G. and Szabo, A. (1982b) J. Am. Chem. Soc., 104, 4559-4570.
32. Mandel, A.M., Akke, M. and Palmer III, A.G. (1995) J. Mol. Biol., 246, 144-163.
33. Marquardt, D.W. (1963) J. Soc. Ind. Appl. Math., 11, 431-441.
34. Meiboom, S. and Gill, D. (1958) Rev. Sci. Instrum., 29, 688-691.
35. Meiboom, S. (1961) J. Chem. Phys., 34, 375-388.
36. Mengeritsky, G., Goldenberg, D., Mendelson, I., Giladi, H. and Oppenheim, A.B. (1993) J. Mol. Biol., 231, 646-657.
37. Nash, H.A. (1996) In Regulation of Gene Expression in Escherichia coli (Eds., Lin, E.C.C. and Lynch, A.S.), R.G. Landes Company, Austin, pp. 149-179.
38. Nicholson, L.K., Yamazaki, T., Torchia, D.A., Grzesiek, S., Bax, A., Stahl, S.J., Kaufman, J.D., Wingfield, P.T., Lam, P.Y.S., Jadhav, P.K., Hodge, C.N., Domaille, P.J. and Chang, C.H. (1995) Nat. Struct. Biol., 2, 274-280.
39. Padas, P.M., Wilson, K.S. and Vorgias, C.E. (1992) Gene, 117, 39-44.
40. Palmer III, A.G., Rance, M. and Wright, P.E. (1991) J. Am. Chem. Soc., 113, 4371-4380.
41. Peng, J.W. and Wagner, G. (1992) J. Magn. Reson., 98, 308-332.
42. Peng, J.W. and Wagner, G. (1995) Biochemistry, 34, 16733-16752.
43. Pettijohn, D.E. (1988) J. Biol. Chem., 263, 12793-12796.
44. Press, W.H., Teukolsky, S.A., Vettering, W.T. and Flannery, B.P. (1992) Numerical Recipes, Cambridge University Press, Cambridge.
45. Rice, P.A. (1997) Curr. Opin. Struct. Biol., 7, 86-93
46. Richarz, R., Nagayama, K. and Wüthrich, K. (1980) Biochemistry, 19, 5189-5196.
47. Schmid, M.B. (1990) Cell, 63, 451-453.
48. Schurr, J.M., Babcock, H.P. and Fujimoto, B.S. (1994) J. Magn. Reson., B105, 211-224.
49. Shindo, H., Kurumizaka, H., Furubayashi, A., Sakuma, C., Matsumoto, U., Yanagida, A., Goshima, N., Kano, Y. and Imamoto, F. (1993) Biol. Pharm. Bull., 16, 437-443.
50. Stone, M.J., Fairbrother, W.J., Palmer III, A.G., Reizer, J., Saier, M.H. and Wright, P.E. (1992) Biochemistry, 31, 4394-4406.
51. Surette, M.G. and Chaconas, G. (1992) Cell, 68, 1101-1108.
52. Szyperski, T., Luginbühl, P., Otting, G., Güntert, P. and Wüthrich, K. (1993) J. Biomol. NMR, 3, 151-164.
53. Tanaka, I., Appelt, K., Dijk, J., White, S.W. and Wilson, K.S. (1984) Nature, 310, 376-381.
54. Tjandra, N., Feller, S.E., Pastor, R.W. and Bax, A. (1995) J. Am. Chem. Soc., 117, 12562-12566.
55. Tjandra, N., Wingfield, P., Stahl, S. and Bax, A. (1996) J. Biomol. NMR, 8, 273-284.
56. Tropp, J. (1980) J. Chem. Phys., 47, 6035-6043.
57. Vis, H., Boelens, R., Mariani, M., Stroop, R., Vorgias, C.E., Wilson, K.S. and Kaptein, R. (1994) Biochemistry, 33, 14858-14870.
58. Vis, H., Mariani, M., Vorgias, C.E., Wilson, K.S., Kaptein, R. and Boelens, R. (1995) J. Mol. Biol., 254, 692-703.
59. Vis, H., Vageli, O., Nagel, J., Vorgias, C.E., Wilson, K.S., Kaptein, R. and Boelens, R. (1996) Magn. Reson. Chem., 34, S81-S86.
60. Wagner, G. (1993) Curr. Opin. Struct. Biol., 3, 748-754.
61. Welfle, H., Misselwitz, R., Welfle, K., Groch, N. and Heinemann, U. (1992) Eur. J. Biochem., 204, 1049-1055.
62. White, S.W., Appelt, K., Wilson, K.S. and Tanaka, I. (1989) Proteins, 5, 281-288.
63. Woessner, D.E. (1962) J. Chem. Phys., 36, 647-654.