Binding stability of a cross-linked drug: Calculation of an anticancer drug cisplatin-DNA complex

Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics

Volumn 55, Issue 5, 1997, Pages 5843-5848

  Chen, Y Z ^a,b   Zhang, Yong li ^a   Prohofsky, E W ^b  

^a INSTITUTE OF THEORETICAL PHYSICS   (China)

^b PURDUE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0001525029     PISSN: 1063651X     EISSN: None     Source Type: Journal    
DOI: 10.1103/PhysRevE.55.5843     Document Type: Article

References (29)

1. A. DiMarco, F. Arcamone, and F. Zunino, in Antibiotics, Mechanism of Action of Antimicrobial and Antitumor Agents, edited by J.W. Corcoran and F.E. Hahn (Springer-Verlag, Berlin, 1975), pp. 101–128.
2. C. Zimmer and U. Wahnert, Prog. Biophys. Mol. Biol.47, 31 (1987).
3. Y Z. Chen and E W. Prohofsky, Biophys. J.66, 820 (1994).
4. Y Z. Chen and E W. Prohofsky, Phys. Rev. E51, 5048 (1995).
5. K M. Comess and S J. Lippard, in Molecular Aspects of Anticancer Drug-DNA Interactions, edited by S. Neidle and M. Waring (Macmillan, London, 1983), pp. 134–168.
6. J. Reedijk, Inorg. Chim. Acta198, 873 (1992).
7. B R. Gelin, in Computer Simulation of Biomolecular Systems Vol. 2, edited by W. F. van Gunsteren, P. K. Weiner, and A. J. Wilkinson (ESCOM, Leiden, 1993), pp. 127–146.
8. N T. Yu, Methods Enzymol.130, 350 (1986).
9. Y Z. Chen and E W. Prohofsky (unpublished).
10. S J. Weiner, P A. Kollman, D A. Case, U C. Singh, C. Ghio, G. Alagona, S. Profeta and P. Weiner, J. Am. Chem. Soc.106, 765 (1984).
11. M. Tsuboi, S. Takahashi, and I. Harada, in Physico-Chemical Properties of Nucleic Acids edited by J. Duchesne (Academic, New York, 1973), Vol. 2, pp. 91–145.
12. W N. Mei, M. Kohli, E W. Prohofsky and L.L. Van Zandt, Biopolymers20, 833 (1981).
13. N C. Baid, Int. J. Quantum Chem.: Quantum Biol. Symp.1, 49 (1974).
14. W J. Pietro, M M. Francl, W J. Hehre, D J. DeFrees, J A. Pople and J S. Binkley, J. Am. Chem. Soc.104, 5039 (1982).
15. S.-I. Mizushima, I. Nakagawa, M J. Schmelz, C. Curran and J V. Quagllano, Spectrochim. Acta13, 31 (1958).
16. D D. Jones, I. Bernal, M N. Frey and T F. Koetzle, Acta Crystallogr. B30, 562 (1974).
17. H.E. Van Wart, L L. Shipman and H A. Scheraga, J. Phys. Chem.79, 1428 (1975).
18. Y Z. Chen and E W. Prohofsky, Biopolymers33, 797 (1993).
19. B R. Gelin and M. Karplus, Biochemistry18, 1256 (1979).
20. N R. Werthamer, Phys. Rev. B1, 572 (1970).
21. Y Z. Chen, W. Zhuang and E W. Prohofsky, Biopolymers31, 1273 (1991).
22. Callen, in Thermodynamics and an Introduction to Thermostatics, 2nd ed. (Wiley, New York, 1985), pp. 433–435.
23. V V. Prabhu, L. Young, E W. Prohofsky and G S. Edwards, Phys. Rev. B39, 5436 (1989).
24. D P. Goldenberg, L S. Bekeart, D A. Laheru and J D. Zhou, Biochemistry32, 2835 (1993).
25. C N. Pace, G R. Grimsley, J A. Thomson and B J. Barnett, J. Biol. Chem.263, 11 820 (1988).
26. M. Ikeguchi, S. Sugai, M. Fujino, T. Sugawara and K. Kuwajima, Biochemistry31, 12 695 (1992).
27. Y. Konishi, T. Ooi and H A. Scheraga, Biochemistry21, 4741 (1982).
28. L A. Marky and K J. Breslauer, Proc. Natl. Acad. Sci. U.S.A.84, 4359 (1987).
29. D P. Remeta, C P. Mudd, R L. Berger and K J. Breslauer, Biochemistry32, 5064 (1993).