Is the PTP Test Useful?

Cladistics

Volumn 14, Issue 3, 1998, Pages 297-302

  Slowinski, Joseph B ^a,b   Crother, Brian I ^a  

^a SOUTHEASTERN LOUISIANA UNIVERSITY   (United States)

^b CALIFORNIA ACADEMY OF SCIENCES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0001482919     PISSN: 07483007     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1096-0031.1998.tb00340.x     Document Type: Article

References (17)

1. Archie, J. W. (1989a). A randomization test for phylogenetic information in systematic data. Syst. Zool. 38, 219-252.
2. Archie, J. W. (1989b). Phylogenies of plant families: A demonstration of phylogenetic randomness in DNA sequence data derived from proteins. Evolution 43, 1796-800.
3. Bremer, K. (1994). Branch support and tree stability. Cladistics 10, 295-304.
4. Bryant, H. N. (1992). The role of permutation probability tests in phylogenetic systematics. Syst. Biol. 41, 258-263.
5. Carpenter, J. M. (1992). Random cladistics. Cladistics 8, 147-153.
6. Faith, D. P. (1990). Chance marsupial relationships. Nature 345, 393-394.
7. Faith, D. P., and Ballard, J. W. O. (1994). Length differences and topology-dependent tests: A response to Kàllersj'ö et al. Cladistics 10, 57-64.
8. Faith, D. P., and Cranston, P. S. (1991). Could a cladogram this short have arisen by chance alone? On permutation tests for cladistic structure. Cladistics 7, 1-28.
9. Faith, D. P., and Cranston, P. S. (1992). Probability, parsimony, and Popper. Syst. Biol. 41, 252-257.
10. Farris, J. S., Källersjö, M., Kluge, A. G., and Bult, C. (1994). Permutations. Cladistics 10, 65-76.
11. Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39, 783-791.
12. Hillis, D. M., and Bull, J. J. (1993). An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42, 182-192.
13. Källersjö, M., Farris, J. S., Kluge, A. G., and Bult, C. (1992). Skewness and permutation. Cladistics 8, 275-287.
14. Sanderson, M. J. (1995). Objections to bootstrapping phylogenies: A critique. Syst. Biol. 44, 299-320.
15. Sanderson, M. J., and Donoghue, M. J. (1996). The relationship between homoplasy and confidence in a phylogenetic tree. In "Homoplasy: the Recurrence of Similarity in Evolution" (M. J. Sanderson, and L. Hufford, Eds), pp. 67-89. Academic Press, New York.
16. Swofford, D. L. (1997). "PAUP*: Phylogenetic Analysis using Parsimony (* and other methods), Version 4.0". Program and Documentation. Sinauer, Sunderland, Massachusetts.
17. Trueman, J. W. H. (1993). Randomization confounded: A response to Carpenter. Cladistics 9, 101-109.