Molecular dynamics simulations of modelled angiogenin-mononucleotide complexes

Current Science

Volumn 78, Issue 7, 2000, Pages 852-857

  Madhusudhan, M S ^a   Vishveshwara, S ^a  

^a INDIAN INSTITUTE OF SCIENCE   (India)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0001457723     PISSN: 00113891     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (24)

1. Brunger, A. T., Adams, P. D. and Rice, L. M., Structure, 1997, 5, 325-336.
2. Brunger, A. T., Kurian, J. and Karplus, M., Science, 1987, 235, 458-460.
3. Doniach, S. and Eastman, P., Curr. Opin. Struct. Biol., 1999, 9, 157-163.
4. Pedersen, L. and Darden, T., in Encyclopedia of Computational Chemistry (ed. Schleyer, P. V.), vol. 2, pp. 1650-1659.
5. Seshadri, K., Rao, V. S. R. and Vishveshwara, S., Biophys. J., 1995, 69, 2185-2194.
6. Acharya, K. R., Shapiro, R., Riordan, J. F. and Vallee, B. L., Proc. Natl. Acad. Sci. USA, 1995, 92, 2949-2953.
7. Acharya, K. R., Shapiro, R., Allen, S. C. Riordan J. F. and Vallee B. L., Proc. Acad. Natl. Sci. USA, 1994, 91, 2915-2919.
8. Lequin, O., Albaret, C., Bontems, F., Spik, G. and Jean-Yves-Lallemand, Biochemistry, 1996, 35, 8870-8880.
9. Lequin, O., Thuring, H., Robin, M. and Jean-Yves-Lallemand, Eur. J. Biochem., 1997, 250, 712-726.
10. Leonidas, D. D., Shapiro, R., Allen, S. C., Subbarao, G. V., Veluraja, K. and Acharya, K. R., J. Mol. Biol., 1999, 285, 1209-1233.
11. Madhusudhan, M. S. and Vishveshwara, S., J. Biol. Struct. Dyn., 1998, 16, 715-722.
12. Riordan, J. F., in Ribonucleases: Structures und Functions (eds D'Alessio, G. and James F Riordan), Academic Press, New York, 1997, pp. 445-489.
13. Pearlman, D. A., Case, D. A., Caldwell, J. W., Ross, W. S., Cheetam, T. E. III, Ferguson, D. M., Seibel, G. L., Singh, U. C., Weiner, P. K. and Kollman, P. A., AMBER4.1, University of California, San Francisco, 1995.
14. Cornell, W. D., Cieplak, P., Bayly, C. I., Gould, I. R., Merz, K. M. Jr., Ferguson, D. M., Spellmeyer, D. C., Fox, T., Caldwell, J. W. and Kollman, P. A., J. Am. Chem. Soc., 1995, 117, 5179-5197.
15. Jorgensen, W. L., Chandrashekar, J., Madura, J. D., Impey, R. W. and Klien, M. L. J., J. Chem. Phys., 1983, 79, 926-935.
16. Eftink, M. R. and Biltonen, R. L., Biochemistry, 1983, 22, 5123-5134.
17. Berendsen, H. J. C., Postma, J. P., Van Gunstren, W. F., DiNola, A. and Haak., J. R., J. Chem. Phys., 1984, 81, 3684-3690.
18. Ryckaert, J. P., Ciccotti, G. and Berendsen, H. J. C., J. Comput. Phys., 1977, 23, 327-341.
19. Darden, T. A., York, D. and Pedersen, L. J., J. Chem. Phys., 1993, 98, 10089-10092.
20. Cheetam, T. E. III, Miller, J. L., Fox, T., Darden, T. A. and Kollman, P. A., J. Am. Chem. Soc., 1995, 117, 4193-4194.
21. Kearsley, S. K., Acta Crystallogr., 1989, A45, 208-210.
22. Zegers, I., Maes, D., Dao-Thi, M. H., Poortmans, F., Palmer, R. and Wyns, L. Protein Sci., 1994, 3, 2322-2339.
23. Russo, N., Shapiro, R., Acharya, K. R., Riordan, J. F. and Vallee, B. L., Proc. Natl. Acad. Sci. USA, 1994, 91, 2920-2924.
24. 24: Humphery, W., Dalke, A. and Shulten, K., J. Mol. Graphics, 1996, 14, 33-38.