Tools for the automated assignment of high-resolution three-dimensional protein NMR spectra based on pattern recognition techniques

Journal of Biomolecular NMR

Volumn 10, Issue 3, 1997, Pages 207-219

  Croft, David ^a   Kemmink, Johan ^a   Neidig, Klaus Peter ^b   Oschkinat, Hartmut ^a,c  

^a EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^b Bruker Analytik GmbH   (Germany)

^c LEIBNIZ INSTITUT FÜR MOLEKULARE PHARMAKOLOGIE   (Germany)

Author keywords

Automated assignment; Multidimensional NMR spectroscopy; Pattern recognition; Protein NMR

Indexed keywords

EID: 0001398952     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1018329420659     Document Type: Article

References (31)

1. Bartels, C., Xia, T., Billeter, M., Güntert, P. and Wüthrich, K. (1995) J. Biomol. NMR, 6, 1-10.
2. Bax, A., Clore, G.M. and Gronenborn, A.M. (1990) J. Magn. Reson., 88, 425-431.
3. Billeter, M. (1991) In Computational Aspects of the Study of Biological Macromolecules by NMR Spectroscopy (Eds., Hoch, J.C., Redfield, C. and Poulsen, F.M.), NATO ASI Series Vol. A225, Plenum Press, New York, NY, U.S.A., pp. 279-290.
4. Cieslar, C., Clore, G.M., Gronenborn, A.N. (1988) J. Magn. Reson., 80, 119-127.
5. Denk, W., Wagner, G, Rance, M. and Wüthrich, K. (1985) J. Magn. Reson., 62, 350-366.
6. Dötsch, V., Oswald, R.E. and Wagner, G. (1996a) J. Magn. Reson., B110, 107-111.
7. Dötsch, V., Oswald, R.E. and Wagner, G. (1996b) J. Magn. Reson., B110, 304-308.
8. Eads, C.D. and Kuntz, I.D. (1989) J. Magn. Reson., 82, 467-482.
9. Eccles, C., Güntert, P., Billeter, M. and Wüthrich, K. (1991) J. Biomol. NMR, 1, 111-130.
10. Fesik, S.W. and Zuiderweg, E.R.P. (1988) J. Magn. Reson., 78, 588-593.
11. Groß, K.-H. and Kalbitzer, H.R. (1988) J. Magn. Reson., 76, 87-99.
12. Ikura, M., Kay, L.E. and Bax, A. (1991) J. Biomol. NMR, 1, 299-304.
13. Kay, L.E., Ikura, M. and Bax, A. (1990a) J. Am. Chem. Soc., 112, 888-889.
14. Kay, L.E., Ikura, M., Tschudin, R. and Bax, A. (1990b) J. Magn. Reson., 89, 496-514.
15. Kemmink, J., Darby, N.J., Dijkstra, K., Scheek, R.M. and Creighton, T.E. (1995) Protein Sci., 4, 2587-2593.
16. Kemmink, J., Darby, N.J., Dijkstra, K., Nilges, M. and Creighton, T.E. (1996) Biochemistry, 35, 7684-7691.
17. Kleywegt, G.J., Boelens, R., Cox, M., Llinás, M. and Kaptein, R. (1991) J. Biomol. NMR, 1, 23-47.
18. Kraulis, P.J. (1989) J. Magn. Reson., 84, 627-633.
19. Marion, D., Driscoll, P.C., Kay, L.E., Wingfield, P.T., Bax, A., Gronenborn, A.M. and Clore, G.M. (1989) Biochemistry, 28, 6150-6156.
20. Meadows, R.P., Olejniczak, E.T. and Fesik, S.W. (1994) J. Biomol. NMR, 4, 79-96.
21. Neidig, K.-P. (1992) AURELIA: Computer aided analysis of 2D and 3D NMR, User's Guide, Bruker Analytik GmbH, Rheinstetten, Germany.
22. Nelson, S.J., Schneider, D.M., Di Stefano, D.L. and Wand, A.J. (1991) Bull. Magn. Reson., 13, 14-21.
23. Nietlispach, D., Clowes, R.T., Broadhurst, R.W, Yutaka, I., Keeler, J., Kelly, M., Ashurst, J., Oschkinat, O., Domaille, P.J. and Laue, E.D. (1996) J. Am. Chem. Soc., 118, 407-415.
24. Oschkinat, H., Holak, T.A. and Cieslar, C. (1991) Biopolymers, 31, 699-712.
25. Schalkoff, R.J. (1989) Digital Image Processing and Computer Vision, Wiley, New York, NY, U.S.A.
26. Shaw, G.L., Müller, T., Mott, H.R., Oschkinat, H., Campbell, I.D. and Mitschang, L. (1997) J. Magn. Reson., 124, 479-483.
27. Van de Ven, F.J.M. (1990) J. Magn. Reson., 86, 633-644.
28. Vuister, G.W., Boelens, R., Padilla, A., Kleywegt, G.J. and Kaptein, R. (1990) Biochemistry, 29, 1829-1839.
29. Wishart, D.S., Sykes, B.D. and Richards, F.M. (1991) J. Mol. Biol., 222, 311-333.
30. Wüthrich, K., Wider, G., Wagner, G. and Braun, W. (1982) J. Mol. Biol., 155, 311-319.
31. Xu, J., Straus, S.K., Sanctuary, B.C. and Trimbles, L. (1994) J. Magn. Reson., B103, 53-58.