Tribal relationships in Caprifoliaceae: Evidence from a cladistic analysis using ndhF sequences

Systematics and Geography of Plants

Volumn 69, Issue 2, 1999, Pages 145-159

  Pyck, Nancy ^a   Roels, Peter ^a   Smets, Erik ^a  

^a UNIVERSITY OF LEUVEN   (Belgium)

Author keywords

Caprifoliaceae; Chloroplast DNA; Dipsacales; ndhF; Phylogeny

Indexed keywords

CAPRIFOLIACEAE; DIPSACACEAE; DIPSACALES; SYMPHORICARPOS; TRIOSTEUM; VALERIANACEAE;

EID: 0001277431     PISSN: 03039153     EISSN: None     Source Type: Journal    
DOI: 10.2307/3668539     Document Type: Article

References (81)

1. Backlund A. & Bremer B. (1997) Phylogeny of the Asteridae s.s. based on rbcL sequences, with particular reference to the Dipsacales. Plant Syst. Evol. 207: 225-255.
2. Backlund A. & Donoghue M.J. (1996) Morphology and phylogeny of the order Dipsacales. In Backlund A. Phylogeny of the Dipsacales: 1-55. PhD thesis, Uppsala University.
3. Backlund A. & Pyck N. (1998) Diervillaceae and Linnaeaceae, two new families of caprifolioids. Taxon 47: 657-661.
4. Benko-Iseppon A.M. & Morawetz W. (1993) Cold-induced chromosome regions and karyosystematics in Sambucus and Viburnum. Bot. Acta 106: 183-191.
5. Bohm B.A. & Glennie C.W.M. (1971) A chemosystematic study of the Caprifoliaceae. Can. J. Bot. 49: 1799-1807.
6. Bremekamp C.E.B. (1939) On the position of the genera Carlemannia Benth. and Sylvianthus Hook.f. Rec. Trav. Bot. Néerl. 36: 372.
7. Bremer K. (1994) Branch support and tree stability. Cladistics 10: 295-304.
8. Brummitt R.K. (1992) Vascular plant families and genera. Kew, Royal Botanic Gardens.
9. Chase M.W. & Hills H.H. (1991) Silica gel: an ideal material for field preservation of leaf samples for DNA studies. Taxon 40: 215-220.
10. Clark L.G., Zhang W. & Wendel J.F. (1995) A phylogeny of the grass family (Poaceae) based on ndhF sequence data. Syst. Bot. 20: 436-460.
11. Cronquist A. (1988) The evolution and classification of flowering plants. New York, The New York Botanical Garden Bronx.
12. Dahlgren G. (1989) The last Dahlgrenogram - System of classification of the dicotyledons. In Tan K. (ed.), The Davis and Hedge Festschrift: 249-260. Edinburgh, Edinburgh University Press.
13. Dahlgren R. (1975) The distribution of characters within an Angiosperm system. Some embryological characters. Bot. Not. 128: 181-197.
14. Donoghue M.J. (1983) The phylogenetic relationships of Viburnum. In Platnick N.I. & Funk V.A. (eds.) Advances in cladistics, Volume 2: 143-166 New York, Columbia University Press.
15. Donoghue M.J., Olmstead R.G., Smith J.F. & Palmer J.D. (1992) Phylogenetic relationships of Dipsacales based on rbcL sequences. Ann. Missouri Bot. Gard. 79: 333-345.
16. Downie S.R. & Palmer J.D. (1992) Restriction site mapping of the chloroplast DNA inverted repeat: a molecular phylogeny of the Asteridae. Ann. Missouri Bot. Gard. 79: 266-283.
17. Doyle J.J. & Doyle J.L. (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19: 11-15.
18. Eichler A.W. (1954) Blüthendiagramme Erster Theil. Leipzig, Engelmann.
19. Erdtman G. (1971) Pollen morphology and plant taxonomy, Angiosperms. New York, Hafner.
20. Farris J.S. (1989) The retention index and the rescaled consistency index. Cladistics 5: 417-419.
21. Felsenstein J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
22. Ferguson I.K. (1966) The genera of Caprifoliaceae in the southeastern United States. J. Arnold Arb. 47: 33-59.
23. Fitch W.M. (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst. Zool. 20: 406-416.
24. Fritsch K. (1897) Caprifoliaceae. In Engler A. & Prantil K. (eds.) Die natürlichen Planzenfamilien, volume 4 (4): 156-169. Leipzig, Wilhelm Engelmann.
25. Fukuoka N. (1968) Phylogeny of the tribe Linnaeeae. Acta Phytotaxon. Geobot. 23: 82-94.
26. Fukuoka N. (1969) Inflorescence of Linnaeeae (Caprifoliaceae). Acta Phytotaxon. Geobot. 23: 153-162.
27. Fukuoka N. (1972) Taxonomic study of the Caprifoliaceae. Mem. Fac. Sci. Kyoto Univ. Ser. Biol. 6: 15-58.
28. Goloboff P.A. (1993) NONA version 1.8 Program and documentation distributed by the author. Tucumán, Argentina.
29. Hallier H. (1912) L'origine et le système phylétique des angiosperms exposés à l'aide de leur arbre généalogique. Arch. Néerl. Sci. Exactes et Nat. 3: 146-234.
30. Hara H. (1983) A revision of Caprifoliaceae of Japan with reference to allied plants in other districts and the Adoxaceae. Ginkgoana 5: 1-336.
31. Heywood V.H. (1979) Flowering plants of the world. Oxford, Oxford University Press.
32. Hillebrand G.R. & Fairbrothers D.E. (1970) Phytoserological systematic survey of the Caprifoliaceae. Brittonia 22: 125-133.
33. Hillis D.M. & Huelsenbeck J.P. (1992) Signal, noise, and reliability in molecular phylogenetic analyses. J. Hered. 83: 189-195.
34. Hillis D.M., Allard M.W. & Miyamoto M.M. (1993) Analysis of DNA sequence data: phylogenetic inference. Meth. Enzymol. 224: 456-487.
35. Hilu K. & Liang H. (1997) The matK gene: sequence variation and application in plant systematics. Amer. J. Bot. 84: 830-839.
36. Hofmann U. (1989) Warum sind Sambucus und Viburnum keine Dipsacales? In Weber A., Vitek E. & Kiehn M. (eds.) 9 Symposium Morphologie, Anatomie und Systematik: 24. Wien.
37. Hoot S.B., Culham A. & Crane P.R. (1995). The utility of atpB gene sequences in resolving phylogenetic relationships: comparison with rbcL and 18S ribosomal DNA sequences in the Lardizabalaceae. Ann. Missouri Bot. Gard. 82: 194-207.
38. Hsu P.-S. (1983) A preliminary numerical taxonomy of the family Caprifoliaceae. Acta Phytotaxon. Sin. 21: 26-32.
39. Huelsenbeck J.P. (1991) Tree-length distribution skewness: an indicator of phylogenetic information. Syst. Zool. 40: 257-270.
40. Hutchinson J. (1964) The genera of flowering plants (Angiospermae), Dicotyledones. Oxford, The Clarendon Press.
41. Judd W.S., Sanders R.W. & Donoghue M.J. (1994) Angiosperm family pairs: preliminary phylogenetic analyses. Harvard Pap. Bot. 5: 1-51.
42. Jussieu A.-L. de (1789) Genera Plantarum Secundum Ordines Naturales Disposita, Juxta Methodum in Horto Regio Parisiensi Exaratam, Anno 1774. Paris, Vidaum Herissant.
43. Källersjö M., Farris J.S., Kluge A.G. & Bult C. (1992) Skewness and permutation. Cladistics 8: 275-287.
44. Kaltenboeck B., Spatafora J.W., Zhang X., Kousoulas K.G., Blackwell M. & Storz J. (1992) Efficient production of single-stranded DNA as long as 2kb for sequencing of PCR-amplified DNA. Biotechniques 12: 164-171.
45. Kim K.-J. & Jansen R.K. (1995) NdhF sequence evolution and the major clades in the sunflower family. Proc. Natl. Acad. Sci. U.S.A. 92: 10379-10383.
46. Kluge A.G. & Farris J.S. (1969) Quantitative phyletics and the evolution of anurans. Syst. Zool. 18: 1-32.
47. Lewis W.H. & Frantz P.R. (1973) Tribal classification of Triosteum (Caprifoliaceae). Rhodora 75: 120-121.
48. Mabberley D.J. (1997) The plant book, a portable dictionary of the higher plants. New York, University Press.
49. Maddison W.P. & Maddison D.R. (1992) MacClade: interactive analysis of phylogeny and character evolution, version 3.01. Sunderland Massachusetts, Sinauer.
50. Melchior H. (1964) Caprifoliaceae. In Engler A. (ed.) Syllabus der Planzenfamilien 2, 12th edn.: 473-475. Berlin, Borntraeger.
51. Neyland R. & Urbatsch L.E. (1996) Phylogeny of subfamily Epidendroideae (Orchidaceae) inferred from ndhF chloroplast gene sequences. Amer. J. Bot. 83: 1195-1206.
52. Ohyama K., Takayuki K., Sano T. & Yamada Y. (1988) Newly identified groups of genes in chloroplast. TIBS 13: 19-22.
53. Olmstead R.G. & Palmer JD. (1994) Chloroplast DNA systematics: a review of methods and data analysis. Amer. J. Bot. 81: 1205-1224.
54. Olmstead R.G. & Reeves P.A. (1995) Evidence for the polyphyly of the Scrophulariaceae based on chloroplast rbcL and ndhF sequences. Ann. Missouri Bot. Gard. 82: 176-193.
55. Olmstead R.G. & Sweere J.A. (1994) Combining data in phylogenetic systematics: an empirai approach using three molecular data sets in the Solanaceae. Syst. Biol. 43: 467-481.
56. Olmstead R.G., Bremer B., Scott K.M. & Palmer J.D. (1993) A parsimony analysis of the Asteridae sensu lato based on rbcL sequences. Ann. Missouri Bot. Gard. 80: 700-722.
57. Olmstead R.G., Michaels HJ., Scott K.M. & Palmer J.D. (1992) Monophyly of the Asteridae and identification of their major lineages inferred from DNA sequences of rbcL. Ann. Missouri Bot. Gard. 79: 249-265.
58. Plunkett G.M., Soltis D.E. & Soltis P.S. (1997) Clarification of the relationship between Apiaceae and Araliaceae based on matK and rbcL sequence data. Amer. J. Bot. 84: 565-580.
59. Rao V.B. (1994) Direct sequencing of polymerase chain reaction-amplified DNA. Anal. Biochem. 216: 1-14.
60. Roels P. (1998) Phylogenetic position and delimitation of the order Dipsacales - A multidisciplinary approach. Unpubl. PhD thesis, K.U.Leuven.
61. Saghai-Maroof M.A., Soliman, K.M., Jorgensen, R.A. & Allard R.W. (1984) Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc. Natl. Acad. Sci. U.S.A. 81: 8014-8018.
62. Scotland R.W., Sweere V., Reeves P.A. & Olmstead R.G. (1995) Higher-level systematics of Acanthaceae determined by chloroplast DNA sequences. Amer. J. Bot. 82: 266-275.
63. Smith J.F., Wolfram J.C., Brown K.D., Carroll C.L. & Denton D.S. (1997) Tribal relationships in the Gesneriaceae: evidence from DNA sequences of the chloroplast gene ndhF. Ann. Missouri Bot. Garden 84: 50-66.
64. Sugiura M. (1992) The chloroplast genome. Plant Mol. Biol. 19: 149-168.
65. Swofford D.L. (1993) PAUP: Phylogenetic analysis using parsimony, version 3.1.1. Champaign, Illinois Natural History Survey.
66. Takhtajan A.L. (1980) Outline of the classification of the flowering plants (Magnoliophyta). Bot. Rev. 46: 225-359.
67. Takhtajan A.L. (1997) Diversity and classification of flowering plants. New York, University Press.
68. Tang Y.-C. & Li L.-Q. (1994) The phytogeography of Caprifoliaceae s. str. with its implications for understanding eastern Asiatic flora. Acta Phytotaxon. Sin. 32: 197-218.
69. Terry R.G., Brown G.K. & Olmstead R.G. (1996) Examination of subfamilial phylogeny in Bromeliaceae using comparative sequencing of the plastid locus ndhF. Amer. J. Bot. 84: 664-670.
70. Thorne R.F. (1983) Proposed new realignments in the Angiosperms. Nord. J. Bot. 3: 85-117.
71. Thorne R.F. (1992) Classification and geography of the flowering plants. Bot. Rev. 58: 225-348.
72. Troll W. & Weberling F. (1966) Die Infloreszenzen der Caprifoliaceen und ihre systematische Bedeutung. Abh. Acad. Wiss. Lit. Mainz, math.-naturw. Kl. 4: 455-605.
73. Tugores A. & Brenner D.A. (1994) Hints for direct sequencing of PCR-generated single-stranded DNA. Biotechniques 17: 412-414.
74. Umesono K. & Ozeki H. (1987) Chloroplast gene organization in plants. Trends Genet. 3: 281-299.
75. Verlaque R. (1977) Rapports entre les Valerianaceae, les Morinaceae et les Dipsacaceae. Bull. Soc. Bot. Fr. 124: 475-482.
76. Verlaque R. (1984) Etude biosystématique et phylogénétique des Dipsacaceae I. Délimination des Dipsacaceae à l'intérieur des Dipsacales, rapports avec les autres familles de l'ordre. Rev. Gén. Bot. 91: 81-121.
77. Wagenitz G. & Laing B. (1984) Die Nektarien der Dipsacales und ihre systematische Bedeuting. Bot. Jahrb. Syst. 104: 483-507.
78. Weberling F. & Engel K. (1975) Zur Morphologie und Entwicklungsweise von Nardostachys jatamansi (D. Don) DC. (Valerianaceae). Flora 164: 377-391.
79. Wilkinson A.M. (1948) Floral anatomy and morphology of some species of the tribes Linnaeeae and Sambucaceae of the Caprifoliaceae. Amer. J. Bot. 35: 365-371.
80. Wilkinson A.M. (1949) Floral anatomy and morphology of Triosteum and of the Caprifoliaceae in general. Amer. J. Bot. 36: 481-489.
81. Zomlefer W.B. (1994) Guide to flowering plant families. Chapel Hill and London, The University of North Carolina Press.