Genetic selection strategies for generating and characterizing catalysts

Pure and Applied Chemistry

Volumn 68, Issue 11, 1996, Pages 2017-2024

  Kast, Peter ^a   Hilvert, Donald ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0001265337     PISSN: 00334545     EISSN: None     Source Type: Journal    
DOI: 10.1351/pac199668112017     Document Type: Article

References (102)

1. G. Petsko and S. Sligar. Curr. Opin. Struct. Biol. 4, 591-592 (1994).
2. J.M. Thornton and J.M. Berg. Curr. Opin. Biotechnol. 6, 367-369 (1995).
3. D.A. Estell, T.P. Graycar, J.V. Miller, D.B. Powers, J.P. Burnier, P.G. Ng and J.A. Wells. Science 233, 659-663 (1986).
4. J.A. Wells, D.B. Powers, R.R. Bott, T.P. Graycar and D.A. Estell. Proc. Natl. Acad. Sci. USA 84, 1219-1223 (1987).
5. L. Hedstrom. Curr. Opin. Struct. Biol. 4, 608-611 (1994).
6. S.F. Betz, D.P. Raleigh and W.F. DeGrado. Curr. Opin. Struct. Biol. 3, 601-610 (1993).
7. D.K. Dube, M.E. Black, K.M. Munir and L.A. Loeb. Gene 137, 41-47 (1993).
8. W.P.C. Stemmer. Bio/Technology 13, 549-553 (1995).
9. R.R. Breaker and G.F. Joyce. Trends Biotech. 12, 268-275 (1994).
10. J.W. Szostak. Trends Biochem. Sci. 17, 89-93 (1992).
11. A.A. Beaudry and G.F. Joyce. Science 257, 635-641 (1992).
12. B. Cuenoud and J.W. Szostak. Nature 375, 611-614 (1995).
13. D.E. Huizenga and J.W. Szostak. Biochemistry 34, 656-665 (1995).
14. R.R. Breaker and G.F. Joyce. Chem. Biol. 1, 223-229 (1994).
15. S.J. Klug and M. Famulok. Mol. Biol Reports 20, 97-107 (1994).
16. K.B. Chapman and J.W. Szostak. Curr. Opin. Struct. Biol. 4, 618-622 (1994).
17. G.F. Joyce. Curr. Opin. Struct. Biol. 4, 331-336 (1994).
18. B.L. Iverson. Chem. Biol. 2, 67-70 (1995).
19. M.M. Ouellette and W.E. Wright. Curr. Opin. Biotechnol. 6, 65-72 (1995).
20. I. Hirao and A.D. Ellington. Curr. Biol. 5, 1017-1022 (1995).
21. P. Burgstaller and M. Famulok. Angew. Chem. Int. Ed. Engl. 34, 1189-1192 (1995).
22. T. Tuschl, J.B. Thomson and F. Eckstein. Curr. Opin. Struct. Biol. 5, 296-302 (1995).
23. R.H. Symons. Curr. Opin. Struct. Biol. 4, 322-330 (1994).
24. J.A. Piccirilli, T.S. McConnell, A.J. Zaug, H.F. Noller and T.R. Cech. Science 256, 1420-1424 (1992).
25. M. Illangasekare, G. Sanchez, T. Nickles and M. Yarus. Science 267, 643-647 (1995).
26. X. Dai, A. De Mesmaeker and G.F. Joyce. Science 267, 237-240 (1995).
27. C. Wilson and J.W. Szostak. Nature 374, 777-782 (1995).
28. J.R. Prudent, T. Uno and P.G. Schultz. Science 264, 1924-1927 (1994).
29. M. Sassanfar and J.W. Szostak. Nature 364, 550-553 (1993).
30. R.R. Breaker and G.F. Joyce. J. Mol. Evol. 40, 551-558 (1995).
31. J.R. Lorsch and J.W. Szostak. Biochemistry 33, 973-982 (1994).
32. C.T. Lauhon and J.W. Szostak. J. Am. Chem. Soc. 117, 1246-1257 (1995).
33. P. Burgstaller and M. Famulok. Angew. Chem. Int. Ed. Engl. 33, 1084-1087 (1994).
34. J.R. Lorsch and J.W. Szostak. Nature 371, 31-36 (1994).
35. L.E. Orgel. J. Mol. Biol. 38, 381-393 (1968).
36. L.C. Mattheakis, R.R. Bhatt and W.J. Dower. Proc. Natl. Acad. Sci. USA 91, 9022-9026 (1994).
37. R.B. Denman, M. Smedman, W. Ju, R. Rubenstein, A. Potempska and D.L. Miller. Nucl. Acids Res. 22, 2375-2382 (1994).
38. J.J. Rossi. Curr. Biol. 4, 469-471 (1994).
39. C. Lopez-Camacho and J. Polaina. Mutation Res. 301, 73-77 (1993).
40. R.M. Myers, L.S. Lerman and T. Maniatis. Science 229, 242-247 (1985).
41. R.C. Cadwell and G.F. Joyce. PCR Methods Appl 3, S136-S140 (1994).
42. W.P.C. Stemmer. Nature 370, 389-391 (1994).
43. W.P.C. Stemmer. Proc. Natl Acad. Sci. USA 91, 10747-10751 (1994).
44. J.F. Reidhaar-Olson and R.T. Sauer. Science 241, 53-57 (1988).
45. S. Delagrave, E.R. Goldman and D.C. Youvan. Protein Eng. 6, 327-331 (1993).
46. B. Virnekäs, L. Ge, A. Plückthun, K.C. Schneider, G. Wellnhofer and S.E. Moroney. Nucl. Acids Res. 22, 5600-5607 (1994).
47. A.R. Oliphant and K. Struhl. Proc. Natl. Acad. Sci. USA 86, 9094-9098 (1989).
48. D.K. Dube and L.A. Loeb. Biochemistry 28, 5703-5707 (1989).
49. T. Palzkill, Q.-Q. Le, K.V. Venkatachalam, M. LaRocco and H. Ocera. Mol. Microbiol 12, 217-229 (1994).
50. H. Viadiu, J. Osuna, A.L. Fink and X. Soberón. J. Biol. Chem. 270, 781-787 (1995).
51. J.D. Hermes, S.C. Blacklow and J.R. Knowles. Proc. Natl. Acad. Sci. USA 87, 696-700 (1990).
52. S.C. Blacklow and J.R. Knowles. Biochemistry 29, 4099-4108 (1990).
53. K.M. Munir, D.C. French, D.K. Dube and L.A. Loeb. J. Biol. Chem. 267, 6584-6589 (1992).
54. K.M. Munir, D.C. French, D.K. Dube and L.A. Loeb. Protein Eng. 7, 83-89 (1994).
55. M.E. Black and L.A. Loeb. Biochemistry 32, 11618-11626 (1993).
56. K.M. Munir, D.C. French and L.A. Loeb. Proc. Natl. Acad. Sci. USA 90, 4012-4016 (1993).
57. J.J. Perona, L.B. Evnin and C.S. Craik. Gene 137, 121-126 (1993).
58. L.B. Evnin, J.R. Vásquez and C.S. Craik. Proc. Natl. Acad. Sci. USA 87, 6659-6663 (1990).
59. L.B. Poole, D.A. Loveys, S.P. Hale and J.A. Gerlt. Biochemistry 30, 3621-3627 (1991).
60. E.Z. Baum, G.A. Bebernitz and Y. Gluzman. Proc. Natl. Acad. Sci. USA 87, 5573-5577 (1990).
61. T. Oshima. Curr. Opin. Struct. Biol. 4, 623-628 (1994).
62. H. Liao, T. McKenzie and R. Hageman. Proc. Natl. Acad. Sci. USA 83, 576-580 (1986).
63. M. Matsumura and S. Aiba. J. Biol. Chem. 260, 15298-15303 (1985).
64. E. Haslam, Shikimic Acid: Metabolism and Metabolites, John Wiley & Sons, New York (1993).
65. S.G. Sogo, T.S. Widlanski, J.H. Hoare, C.E. Grimshaw, G.A. Berchtold and J.R. Knowles. J. Am. Chem. Soc. 106, 2701-2703 (1984).
66. S.D. Copley and J.R. Knowles. J. Am. Chem. Soc. 107, 5306-5308 (1985).
67. S.D. Copley and J.R. Knowles. J. Am. Chem. Soc. 109, 5008-5013 (1987).
68. J.J. Gajewski, J. Jurayj, D.R. Kimbrough, M.E. Gande, B. Ganem and B.K. Carpenter. J. Am. Chem. Soc. 109, 1170-1186 (1987).
69. L. Addadi, E.K. Jaffe and J.R. Knowles. Biochemistry 22, 4494-4501 (1983).
70. P. Kast, M. Asif-Ullah, N. Jiang and D. Hilvert. Proc. Natl. Acad. Sci. USA in press (1996).
71. P. Kast, J.D. Hartgerink, M. Asif-Ullah and D. Hilvert. J. Am. Chem. Soc. 118, 3069-3070 (1996).
72. G. Zhao, T. Xia, R.S. Fischer and R.A. Jensen. J. Biol. Chem. 267, 2487-2493 (1992).
73. T. Xia, G. Zhao, R.S. Fischer and R.A. Jensen. J. Gen. Microbiol. 138, 1309-1316 (1992).
74. J.V. Gray, B. Golinelli-Pimpaneau and J.R. Knowles. Biochemistry 29, 376-383 (1990).
75. Y.M. Chook, H. Ke and W.N. Lipscomb. Proc. Natl. Acad. Sci. USA 90, 8600-8603 (1993).
76. Y.M. Chook, J.V. Gray, H. Ke and W.N. Lipscomb. J. Mol. Biol. 240, 476-500 (1994).
77. A.Y. Lee, P.A. Karplus, B. Ganem and J. Clardy. J. Am. Chem. Soc. 117, 3627-3628 (1995).
78. M.R. Haynes, E.A. Stura, D. Hilvert and I.A. Wilson. Science 263, 646-652 (1994).
79. S.T. Cload, D.R. Liu, R.M. Pastor and P.G. Schultz. J. Am. Chem. Soc. 118, 1787-1788 (1996).
80. R.A. Lerner, S.J. Benkovic and P.G. Schultz. Science 252, 659-667 (1991).
81. D. Hilvert. Pure & Appl. Chem. 64, 1103-1108 (1992).
82. P.G. Schultz and R.A. Lerner. Acc. Chem. Res. 26, 391-395 (1993).
83. J.D. Stewart, L.J. Liotta and S.J. Benkovic. Acc. Chem. Res. 26, 396-404 (1993).
84. D. Hilvert. Acc. Chem. Res. 26, 552-558 (1993).
85. D. Hilvert. Curr. Opin. Struct. Biol. 4, 612-617 (1994).
86. L. Makowski. Curr. Opin. Struct. Biol. 4, 225-230 (1994).
87. W.D. Huse, L. Sastry, S.A. Iverson, A.S. Kang, M. Alting-Mees, D.R. Burton, S.J. Benkovic and R.A. Lerner. Science 246, 1275-1281 (1989).
88. J. McCafferty, A.D. Griffiths, G. Winter and D.J. Chiswell. Nature 348, 552-554 (1990).
89. A.S. Kang, C.F. Barbas, K.D. Janda and S.J. Benkovic. Proc. Natl. Acad. Sci. USA 88, 4363-4366 (1991).
90. C.F. Barbas III, A.S. Kang, R.A. Lerner and S.J. Benkovic. Proc. Natl. Acad. Sci. USA 88, 7978-7982 (1991).
91. T. Clackson, H.R. Hoogenboom, A.D. Griffiths and G. Winter. Nature 352, 624-628 (1991).
92. C.F. Barbas III, J.D. Bain, D.M. Hoekstra and R.A. Lerner. Proc. Natl. Acad. Sci. USA 89, 4457-4461 (1992).
93. J. Wagner, R.A. Lerner and C.F. Barbas III. Science 270, 1797-1800 (1995).
94. D.S. Tawfik, B.S. Green, R. Chap, M. Sela and Z. Eshhar. Proc. Natl. Acad. Sci. USA 90, 373-377 (1993).
95. G. MacBeath and D. Hilvert. J. Am. Chem. Soc. 116, 6101-6106 (1994).
96. H. Fenniri, K.D. Janda and R.A. Lerner. Proc. Natl. Acad. Sci. USA 92, 2278-2282 (1995).
97. S.A. Lesley, P.A. Patten and P.G. Schultz. Proc. Natl. Acad. Sci. USA 90, 1160-1165 (1993).
98. J.A. Smiley and S.J. Benkovic. Proc. Natl. Acad. Sci. USA 91, 8319-8323 (1994).
99. D. Hilvert, S.H. Carpenter, K.D. Nared and M.-T.M. Auditor. Proc. Natl. Acad. Sci. USA 85, 4953-4955 (1988).
100. Y. Tang, J.B. Hicks and D. Hilvert. Proc. Natl. Acad. Sci. USA 88, 8784-8786 (1991).
101. K. Bowdish, Y. Tang, J.B. Hicks and D. Hilvert. J. Biol. Chem. 266, 11901-11908 (1991).
102. H.D. Ulrich, P.A. Patten, P.L. Yang, F.E. Romesberg and P.G. Schultz. Proc. Natl. Acad. Sci. USA 92, 11907-11911 (1995).