5S rRNA genes in tribe Phaseoleae: Array size, number, and dynamics

Genome

Volumn 39, Issue 2, 1996, Pages 445-455

  Danna, Kathleen J ^a,b   Workman, Rachel ^a   Coryell, Virginia ^a   Keim, Paul ^a  

^a NORTHERN ARIZONA UNIVERSITY   (United States)

^b UNIVERSITY OF COLORADO   (United States)

Author keywords

Pulsed field gel electrophoresis; rRNA genes; Soybean; Tandem arrays

Indexed keywords

GLYCINE MAX; GLYCINE SOJA; NEONOTONIA WIGHTII; PHASEOLEAE; PHASEOLUS (ANGIOSPERM); PHASEOLUS VULGARIS; SOJA; TERAMNUS LABIALIS;

EID: 0001264953     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g96-056     Document Type: Article

References (45)

1. Chu, G., Vollrath, D., and Davis, R.W. 1986. Separation of large DNA molecules by contour-clamped homogeneous electric fields. Science (Washington, D.C.), 234: 1582-1585.
2. Dover, G.A. 1982. Molecular drive: a cohesive mode of species evolution. Nature (London), 299: 111-117.
3. Dover, G.A. 1986. Molecular drive in multigene families: how biological novelties arise, spread and are assimilated. Trends Genet. 2: 159-165.
4. Doyle, J.J. 1988. 5S ribosomal gene variation in the soybean and its progenitor. Theor. Appl. Genet. 75: 621-624.
5. Doyle, J.J., and Beachy, R.N. 1985. Ribosomal gene variation in soybean (Glycine) and its relatives. Theor. Appl. Genet. 70: 369-376.
6. Doyle, J.J., and Brown, A.H.D. 1989. 5S nuclear ribosomal gene variation in the Glycine tomentella polyploid complex (Leguminosae). Syst. Bot. 14: 398-407.
7. Doyle, J.J., and Doyle, J.L. 1993. Chloroplast DNA phylogeny of the papilionoid legume tribe Phaseoleae. Syst. Bot. 18: 309-327.
8. Dudin, G., Steegmayer, E.W., Vogt, P., Schnitzer, H., Diaz, E., Howell, K.E., Cremer, T., and Cremer, C. 1988. Sorting of chromosomes by magnetic separation. Hum. Genet. 80: 111-116.
9. Dvořák, J., Zhang, H.-B., Kota, R.S., and Lassner, M. 1989. Organization and evolution of the 5S ribosomal RNA gene family in wheat and related species. Genome, 32: 1003-1016.
10. Ellis, T.H.N., Lee, D., Thomas, C.M., Simpson, P.R., Cleary, W.G., Newman, M.-A., and Burcham, K.W.G. 1988. 5S rRNA genes in Pisum: sequence, long range and chromosomal organization. Mol. Gen. Genet. 214: 333-342.
11. Feinberg, A., and Vogelstein, B. 1983. A technique for radio-labeling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132: 6-13.
12. Gerlach, W.L., and Dyer, T.A. 1980. Sequence organization of the repeating units in the nucleus of wheat which contain 5S rRNA genes. Nucleic Acids Res. 8: 4851-4865.
13. Goldsbrough, P.B., Ellis, T.N.H., and Lomonossoff, G.P. 1982. Sequence variation and methylation of the flax 5S RNA genes. Nucleic Acids Res. 10: 4501-4514.
14. Gottlob-McHugh, S.G., Lévesque, M., MacKenzie, K., Olson, M., Yarosh, O., and Johnson, D.A. 1990. Organization of the 5S rRNA genes in the soybean Glycine max (L.) Merrill and conservation of the 5S rDNA repeat structure in higher plants. Genome, 33: 486-494.
15. Gray, J.W., Lucas, J., Peters, D., Pinkel, D., Trask, B., Van Den Engh, G., and VanDilla, M. 1986. Flow karyotyping and sorting of human chromosomes. Cold Spring Harbor Symp. Quant. Biol. 56: 141-149.
16. Guidet, F., and Langridge, P. 1992. Megabase DNA preparation from plant tissue. Methods Enzymol. 216: 3-12.
17. Guidet, F., Rogowsky, P., and Langridge, P. 1990. A rapid method of preparing megabase plant DNA. Nucleic Acids Res. 18: 4955.
18. Hariharan, N., Reddy, P.S., and Padayatty, J.D. 1987. 5S-rRNA genes in rice embryos. Plant Mol. Biol. 9: 443-451.
19. Hemleben, V., and Werts, D. 1988. Sequence organization and putative regulatory elements in the 5S rRNA genes of two higher plants (Vigna radiata and Matthiola incana) Gene (Amst.), 62: 165-169.
20. Hillis, D.M., Moritz, C., Porter, C.A., and Baker, R.J. 1991. Evidence for biased gene conversion in concerted evolution of ribosomal DNA. Science (Washington, D.C.), 251: 308-310.
21. Honeycutt, R.J., Sobral, B.W.S., McClelland, M., and Atherly, A.G. 1992. Analysis of large DNA from soybean (Glycine max L. Merr.) by pulsed-field gel electrophoresis. Plant J. 2: 133-135.
22. Hymowitz, T., and Singh, R.J. 1987. Taxonomy and speciation. In Soybeans: improvement, production, and uses. 2nd ed. Edited by J.R. Wilcox. Agronomy Monograph No. 16. American Society of Agronomy - Crop Science Society of America - Soil Science Society of America, Madison, Wisc. pp. 23-48.
23. Jabs, E.W., Goble, C.A., and Cutting, G.R. 1989. Macromolecular organization of human centromeric regions reveals high-frequency, polymorphic macro DNA repeats. Proc. Natl. Acad. Sci. U.S.A. 86: 202-206.
24. Keim, P., Olson, T.C., and Shoemaker, R.C. 1988. A rapid protocol for isolation of soybean DNA. Soybean Genet. Newsl. 15: 150-152.
25. Kellogg, E.A., and Appels, R. 1995. Intraspecific and interspecific variation in 5S RNA genes are decoupled in diploid wheat relatives. Genetics, 140: 325-343.
26. Kolchinsky, A., and Gresshoff, P.M. 1992. Nucleotide sequence of the 5S rRNA gene from Glycine soja. Plant Mol. Biol. 19: 1045-1047.
27. Kumar, P.S., and Hymowitz, T. 1989. Where are the diploid (2n = 2x = 20) genome donors of Glycine Wild. (Leguminosae, Papilionoideae)? Euphytica, 40: 221-226.
28. Lackey, J.A. 1980. Chromosome numbers in the Phaseoleae (Fabaceae: Faboideae) and their relation to taxonomy. Am. J. Bot. 67: 595-602.
29. Lapitan, N.L.V., Ganal, M.W., and Tanksley, S.D. 1991. Organization of the 5S ribosomal RNA genes in the genome of tomato. Genome, 34: 509-514.
30. Long, E.O., and Dawid, I.B. 1980. Repeated genes in eukaryotes. Ann. Rev. Biochem. 49: 727-764.
31. Mascia, P.N., Rubenstein, I., Phillips, R.L., Wang, A.S., and Xiang, L.Z. 1981. Localization of the 5S rRNA genes and evidence for diversity in the 5S rDNA region of maize. Gene (Amst.), 15: 7-20.
32. Pukkila, P.J., and Skrzynia, C. 1993. Frequent changes in the number of reiterated ribosomal RNA genes throughout the life cycle of the basidiomycete Coprinus cinereus. Genetics, 133: 203-211.
33. Quemada, H., Roth, E.J., and Lark, K.G. 1987. Changes in methylation of tissue cultured soybean cells detected by digestion with the restriction enzymes HpaII and MspI. Plant Cell Rep. 6: 63-66.
34. Rafalski, J.A., Wiewiorowski, M., and Söll, D. 1982. Organization and nucleotide sequence of nuclear 5S rRNA genes in yellow lupin (Lupinus luteus). Nucleic Acids Res. 10: 7635-7642.
35. Reed, K.C., and Mann, D.A. 1985. Rapid transfer of DNA from agarose gels to nylon membranes. Nucleic Acids Res. 13: 7207-7221.
36. Röder, M.S., Sorrells, M.E., and Tanksley, S.D. 1992. 5S ribosomal gene clusters in wheat: pulsed field gel electrophoresis reveals a high degree of polymorphism. Mol. Gen. Genet. 232: 215-220.
37. Schneeberger, R.G., and Cullis, C.A. 1991. Specific DNA alterations associated with the environmental induction of heritable changes in flax. Genetics, 128: 619-630.
38. Shi, L., Zhu, T., and Keim, P. 1996. Ribosomal RNA genes in soybean and common bean: chromosomal organization, expression, and evolution. Theor. Appl. Genet. In press.
39. Skorupska, H., Albertsen, M.C., Langholz, K.D., and Palmer, R.G. 1989. Detection of ribosomal RNA genes in soybean, Glycine max (L.) Merr., by in situ hybridization. Genome, 32: 1091-1095.
40. Smith, G.P. 1973. Unequal crossover and the evolution of multigene families. Cold Spring Harbor Symp. Quant. Biol. 38: 507-513.
41. Southern, E.M. 1979. Measurement of DNA length by gel electrophoresis. Anal. Biochem. 100: 319-323.
42. Venkateswarlu, K., Lee, S.-W., and Nazar, R.N. 1991. Conserved upstream sequence elements in plant 5S ribosomal RNA-encoding genes. Gene (Amst.), 105: 249-253.
43. Walbot, V., and Cullis, C.A. 1985. Rapid genomic change in higher plants. Annu. Rev. Plant Physiol. 36: 367-396.
44. Zhu, T., Schupp, J.M., Oliphant, A., and Keim, P. 1994. Hypomethylated sequences: Characterization of the duplicate soybean genome. Mol. Gen. Genet. 244: 638-645.
45. Zimmer, E.A., Jupe, E.R., and Walbot, V. 1988. Ribosomal gene structure, variation and inheritance in maize and its ancestors. Genetics, 120: 1125-1136.