The chicken as a model to study microchomosomes in birds: A review

Genetics Selection Evolution

Volumn 30, Issue 3, 1998, Pages 209-219

  Fillon, Valérie ^a  

^a CEMAGREF   (France)

Author keywords

Chicken; Genomic map; Microchromosome; Recombination rate

Indexed keywords

AVES; GALLIFORMES; GALLUS GALLUS;

EID: 0001147625     PISSN: 0999193X     EISSN: None     Source Type: Journal    
DOI: 10.1051/gse:19980301     Document Type: Article

References (80)

1. Antequera F., Bird A., Number of CpG islands and genes in human and mouse, Proc. Natl. Acad. Sci USA 90 (1993) 11995-11999.
2. Auer H., Mayr B., Lambrou M., Schleger W., An extended chicken karyotype, including the NOR chromosome, Cytogenet. Cell Genet. 45 (1987) 218-221.
3. Belterman R.H.R., De Boer L.E.M., A karyological study of 55 species of birds, including karyotypes of 39 species new to cytology, Genetica 65 (1984) 39-82.
4. Bernot A., Zoorob R., Auffray C., Linkage of a new member of the lectin supergene family to chicken MHC genes, Immunogenetics 39 (1994) 221-229.
5. Bloom S.E., Bacon L.D., Linkage of the major histocompatibility (B) complex and the nucleolar organizer in the chicken, J. Hered. 76 (1985) 146-154.
6. Bloom S.E., Delany M.E., Muscarella D.E., Constant and variable features of the avian chromosomes, in: Etches R.J., Gibbins A.M.V. (Eds.), Manipulation of the Avian Genome, CRC press, Guelph, Canada, 1993, pp. 39-59.
7. Bumstead N., Palyga J., A preliminary linkage map of the chicken genome, Genomics 13 (1992) 690-697.
8. Burt A., Bell G., Mammalian chiasma frequencies as a test of two theories of recombination, Nature 326 (1987) 803-805.
9. Burt D.W., Bumstead N., Bitgood J.J., Ponce de Leon F.A., Crittenden L.B., Chicken genome mapping: a new era in avian genetics, Trends Genet. 11 (1995) 190-194.
10. Burt D.W., Jones C.T., Morrice D.R., Taton I.R., Mapping the chicken genome - An aid to comparative studies, Anim. Genet. 27 (suppl. 2) (1996) 66.
11. Carlenius C., Ryttman H., Tegelström H., Jansson H., R-, G- and C-banded chromosomes in the domestic fowl (Gallus domesticus), Hereditas 94 (1981) 61-66.
12. Carpenter A.T.C., Chiasma function, Cell 77 (1994) 959-962.
13. Cheng H.H., Mapping the chicken genome, Poult. Sci. 76 (1997) 1101-1107.
14. Cheng H.H., Crittenden L.B., Microsatellite markers for genetic mapping in the chicken, Poult. Sci. 73 (1994) 539-546.
15. Cheng H.H., Levin I., Vallejo R.L., Khatib H., Dodgson J.B., Crittenden L.B., Hillel J., Development of a genetic map of the chicken with markers of high utility, Poult. Sci. 74 (1995) 1855-1874.
16. Chiappe L.M., The first 85 million years of avian evolution, Nature 378 (1995) 349-355.
17. Christidis L., Animal Cytogenetics, 4 chordata 3, Aves, Gebrüder Borntraeger, Berlin, 1990.
18. Crooijmans R.P.M.A., Van Kampen A.J.A., Van der Poel J.J., Groenen M.A.M., Highly polymorphic microsatellite markers in poultry, Anim. Genet. 24 (1993) 441-443.
19. Crooijmans R.P.M.A., Van der Poel J.J., Groenen M.A.M., Functional genes mapped on the chicken genome, Anim. Genet. 26 (1995) 73-78.
20. Crooijmans R.P.M.A., Groen A.B.F., Van Kampen A.J.A., Van des Beek S., Van der Poel J.J., Groenen M.A.M., Microsatellite polymorphism in commercial broiler and layer lines estimated using pooled blood samples, Poult. Sci. 75 (1996) 904-909.
21. Crooijmans R.P.M.A., Van Oers P.A.M., Strijk J.A., Van der Poel J.J., Groenen M.A.M., Preliminary linkage map of the chicken (Gallus gallus domesticus) genome based on microsatellite markers, 77 new markers mapped, Poult. Sci. 75 (1996) 746-754.
22. De Boer L.E.M., Karyological heterogeneity in the Falconiformes (Aves), Experentia 31 (1975) 1135-1139.
23. De Boer L.E.M., The somatic chromosome complements of 16 species of Falconiformes (Aves) and the karyological relationships of the order, Genetica 65 (1976) 77-113.
24. De Boer L.E.M., Sinoo R.P., A karyological study of Accipitridae (Aves: Falconiformes), with karyotypic descriptions of 16 species new to cytology, Genetica 65 (1984) 89-107.
25. De Boer L.E.M., Van Brink J.M., Cytotaxonomy of the Ciconiiformes (Aves), with karyotypes of eight species new to cytology, Cytogenet. Cell Genet. 34 (1982) 19-34.
26. Dominguez-Steglich M., Auffray C., Schmid M., Linkage of the chicken MHC to the nucleolus organiser region visualised using non-isotopic in situ hybridization, J. Hered. 82 (1991) 503-505.
27. Dutrillaux B., Le rôle des chromosomes dans l'évolution : une nouvelle interprétation, Ann. Génét. 29 (1986) 69-75.
28. Fillon V., Zoorob R., Yerle M., Auffray C., Vignal A., Mapping of the genetically independant chicken major histocompatibility complexes B@ and RFPY@ to the same microchromosome by two-color fluorescent in situ hybridization, Cytogenet. Cell Genet. 75 (1996) 7-9.
29. Fillon V., Morisson M., Zoorob R., Auffray C., Douaire M., Gellin J., Vignal A., Identification of 16 chicken microchromosomes by molecular markers using two-colour Fluorescent In Situ Hybridisation (FISH), Chromosome Res. (1998) in press.
30. Fritschi S., Stranzinger G., Fluorescent chromosome banding in inbred chicken: quinacrine bands, sequential chromomycin and DAPI bands, Theor. Appl. Genet. 71 (1985) 408-412.
31. Girard-Santosuosso O., Bumstead N., Lantier I., Protais J., Colin P., Guillot J.-F., Beaumont C., Malo D., Lantier F., Partial conservation of the mammalian NRAMP1 syntenic group on chicken chromosome 7, Mamm. Genome 8 (1997) 614-616.
32. Guillemot F., Kaufman J.F., Skjoedt K., Auffray C., The major histocompatibility complex in the chicken, Trends Genet. 20 (1989) 145-155.
33. Hu J., Bumstead N., Burke D., Ponce de Leon F.A., Skamene E., Gros P., Malo D., Genetic and physical mapping of the natural resistance-associated macrophage protein 1 (NRAMP1) in chicken, Mamm. Genome 6 (1995) 809-815.
34. Hughes A.L., Hughes M.K., Small genomes for better flyers, Nature 377 (1995) 391.
35. Jones C.T., Morrice D.R., Paton I.R., Burt D.W., Gene homologs on human chromosome 15q21-q26 and a chicken microchromosome identify a new conserved segment, Mamm. Genome 8 (1997) 436-440.
36. Kaback D.B., Chromosome-size dependent control of meiotic recombination in humans, Nature Genet. 13 (1996) 20-21.
37. Kaelbling M., Fechheimer N.S., Synaptonemal complexes and the chromosome complement of domestic fowl, Gallus domesticus, Cytogenet. Cell Genet. 35 (1983) 87-92.
38. Khatib H., Genislav E., Crittenden L.B., Bumstead N., Soller M., Sequence-tagged microsatellite sites as markers in chicken reference and ressource populations, Anim. Genet. 24 (1993) 355-362.
39. King M., Honeycutt R., Contreras N., Chromosomal repatterning in crocodiles: C, G and N-banding and the in situ hybridization of 18S and 26S rRNA cistrons, Genetica 70 (1986) 191-201.
40. Klein S., Morrice D.R., Sang H., Crittenden L.B., Burt D.W., Genetic and physical mapping of the chicken IGF1 gene to chromosome 1 and conservation of synteny with other vertebrate genomes, J. Hered. 87 (1996) 10-14.
41. Krishan A., Microchromosomes in the spermatogenesis of the domestic turkey, Exp. Cell Res. 33 (1964) 1-7.
42. Ladjali K., Tixier-Boichard M., Cribiu E.P., High resolution chromosome preparations for G- and R-banding in Gallus domesticus, J. Hered. 86 (1995) 136-139.
43. Mariani P., Crittenden L.B., Cheng H.H., Wain H.M., Vignal A., Bumstead N., Current state of the genetic map of the chicken, Anim. Genet. 27 (suppl. 2) (1996) 67.
44. Matthey R., Caryotype de mammifères et d'oiseaux, la question des microchromosomes, quelques réflexions sur l'évolution chromosomique, Archiv. Genet. 48 (1975) 12-26.
45. Matzke M.A., Varga F., Berger H., Schernthaner J., Schweizer D., Mayr B., Matzke A.J.M., A 41-42 bp tandemly repeated sequence isolated from nuclear envelopes of chicken erythrocytes is located predominantly on microchromosomes, Chromosoma 99 (1990) 131-137.
46. Matzke A.J.M., Varga F., Gruendler P., Unfried I., Berger H., Mayr B., Mateke M.A., Characterization of a new repetitive sequence that is enriched on microchromosomes of turkey, Chromosoma 102 (1992) 9-14.
47. McQueen H.A., Fantes J., Cross S.H., Clark V.H., Archibald A.L., Bird A.PL., CpG islands of chicken are concentrated on microchromosomes, Nat. Genet. 12 (1996) 321-324.
48. Mengden G.A., Stock A.D., Chromosomal evolution in Serpentes; a comparison of G and C chromosome banding patterns of some Colubrid and Boid genera, Chromosoma 79 (1980) 53-64.
49. Meyne J., Ratliff R.L., Moyzis R.K., Conservation of the human telomere sequence (TTAGGG)n among vertebrates, Proc. Natl. Acad. Sci. USA 86 (1989) 7049-7053.
50. Meyne J., Baker R.J., Hobart H.H., Hsu T.C., Ryder O.A., Ward O.G., Wiley J.E., Wurster-Hill D.H., Yates T.L., Moyzis R.K., Distribution of non-telomeric sites of the (TTAGGG)n telomeric sequence in vertebrate chromosomes, Chromosoma 99 (1990) 3-10.
51. Miller M.M., Goto R., Bernot A., Zoorob R., Auffray C., Bumstead N., Briles W.E., Two Mhc class I and two Mhc class II genes map to the chicken Rfp-Y system outside the B complex, Proc. Natl. Acad. Sci. USA 91 (1994) 4397-4401.
52. Miller M.M., Goto R.M., Taylor R.L., Zoorob R., Auffray C., Briles R.W., Briles W.E., Bloom S., Assignment of Rfp-Y to the chicken B microchromosome and evidence for high frequency recombination associated with the nucleolar organizer region, Proc. Natl. Acad. Sci. USA 93 (1996) 3958-3962.
53. Moran C., Microsatellite repeats in pig (Sus domestica) and chicken (Gallus domesticus) genomes, J. Hered. 84 (1993) 274-280.
54. Morescalchi A., Olmo E., Stingo V., Trends of karyological evolution in Pelobatoid frogs, Experentia 33 (1977) 1577-1578.
55. Morescalchi A., Odierna G., Olmo E., Karyology of the primitive salamanders, family Hynobiidae, Experentia 35 (1979) 1434-1436.
56. Nanda I., Schmid M., Localization of the telomeric (TTAGGG)n sequence in chicken (Gallus domesticus) chromosomes, Cytogenet. Cell Genet. 65 (1994) 190-193.
57. Newcomer E.H., The mitotic chromosomes of the domestic fowl, J. Hered. 48 (1957) 227-234.
58. Ohno S., Sex chromosomes and microchromosomes of Gallus domesticus, Chromosoma 11 (1961) 484-498.
59. Ohno S., Muramoto J., Stenius C., Christian L., Kittrel W.A., Microchromosomes in Holocephalian, Chondrostean and Holostean fishes, Chromosoma 26 (1969) 35-40.
60. Pitel F., Fillon V., Heimel C., Le Fur N., El Khadir-Mounier C., Douaire M., Gellin J., Vignal A., Mapping of FASN and ACACA on two chicken microchromosomes disrupts the human 17q syntenic group well conserved in mammals, Mamm. Genome (1998) in press.
61. Pollock B.J., Fechheimer N.S., Variable C-banding patterns and a proposed C-band karyotype in Gallus domesticus, Genetica 54 (1981) 273-279.
62. Ponce de Leon F.A., Burt D., Physical map of the chicken: an update, in: Etches R.J., Gibbins A.M.V. (Eds.), Manipulation of the Avian Genome, CRC press, Guelph, Canada, 1993.
63. Ponce de Leon F.A., Li Y., Weng Z., Early and late replicative chromosomal banding patterns of Gallus domesticus, J. Hered. 83 (1992) 36-42.
64. Porter C.A., Haiduk M.W., de Queiroz K., Evolution and phylogenetic significance of ribosomal gene location in chromosomes of Squamate Reptiles, Copeia 2 (1994) 302-313.
65. Primmer C.R., Raudsepp T., Chowdhary B.P., Moller A.P., Ellegren H., Low frequency of microsatellites in the avian genome, Genome Res. T (1997) 471-482.
66. Rahn M.I., Solari A.J., Recombination nodules in the oocytes of the chicken, Gallus domesticus, Cytogenet. Cell Genet. 43 (1986) 187-193.
67. Riegert P., Andersen R., Bumstead N., Döhring C., Dominguez-Steglich M., Engberg J., Salomonsen J., Schmid M., Schwager J., Skjodt K., Kaufman J., The chicken β2-microglobulin gene is located on a non-major histocompatibility complex microchromosome: a small, G + C-rich gene with X and Y boxes in the promoter, Proc. Natl. Acad. Sci. USA 93 (1996) 1243-1248.
68. Rodionov A.V., Micro versus macro: a review of structure and functions of avian micro- and macrochromosomes, Russ. J. Genet. 32 (1996) 517-527.
69. Rodionov A.V., Myakoshina Y.U., Chelysheva L.A., Solovei I.V., Gaginskaya E.P., Chiasmata on lampbrush chromosomes of Gallus gallus domesticus. Cytogenetic investigations of recombination frequency and linkage group length, Genetika 28 (1992) 53-63.
70. Rodionov A.V., Chelysheva L.A., Solovei I.V., Miakoshina Y.U., Chiasma distribution in the lampbrush chromosomes of the chicken Gallus gallus domesticus: hot spots of recombination and their possible role in proper dysjunction of homologous chromosomes at the first meiotic division, Genetika 28 (1992) 151-160.
71. Schmid M., Enderle E., Schindler D., Schempp W., Chromosome banding and DNA replication patterns in bird karyotypes, Cytogenet. Cell Genet. 52 (1989) 139-146.
72. Shaw E.M., Shoffner R.N., Foster D.N., Guise K.S., Mapping of the growth hormone gene by in situ hybridization to chicken chromosome 1, J. Hered. 82 (1991) 505-508.
73. Slizynski B.M., Cytological observations on a duck hybrid: Anas clypeata × Anas penelope, Genet. Res. Camb. 5 (1964) 441-447.
74. Stefos K., Arrighi F.E., Repetitive DNA of Gallus domestics and its cytological locations, Exp. Cell Res. 83 (1974) 9-14.
75. Stingo V., Rocco L., Odierna G., Bellitti M., NOR and heterochromatin analysis in two cartilaginous fishes by C-, Ag- and RE (restriction endonuclease)-banding, Cytogenet. Cell Genet. 71 (1995) 228-234.
76. Stock A.D., Mengden G.A., Chromosome banding pattern conservatism in birds and non-homology of chromosome banding pattern between birds, turtles and amphibians, Chromosoma 50 (1975) 69-77.
77. Tegelström H., Ryttman H., Chromosomes in birds (Aves): evolutionary implications of macro- and microchromosome numbers and lengths, Hereditas 94 (1981) 225-233.
78. Van Brink J.M., L'expression morphologique de la digamétie chez les Sauropsidés et les Monotrèmes, Chromosoma 10 (1959) 1-72.
79. Wrigley J.M., Marshall Graves J.A., Karyotypic conservation in the mammalian order monotrema (subclass Prototheria), Chromosoma 96 (1988) 231-247.
80. Zoorob R., Billault A., Severac V., Fillon V., Vignal A., Auffray C., Two chicken genomic libraries in the PAC and BAC cloning systems: organization and characterization, Anim. Genet. 27 (suppl. 2) (1996) 69.