Molecular phylogeny and evolution of monilinia (sclerotiniaceae) based on coding and noncoding run a sequences

American Journal of Botany

Volumn 84, Issue 5, 1997, Pages 686-701

  Holsx Jensen, Arne ^a   Kohn, Linda M ^b   Jakobsen, Kjetill S ^a   Schumacher, Trond ^a  

^a UNIVERSITY OF OSLO   (Norway)

^b UNIVERSITY OF TORONTO   (Canada)

Author keywords

Brown rot; Cospeciation; Ericales; Floral mimicry; Host jumps; Monilinia', plant disease; Plant parasites; Rosaceae; Sclerotiniaceae

Indexed keywords

EID: 0000974890     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.2307/2445905     Document Type: Article

References (70)

1. ANDERBERG, A. A. 1993. Cladistic interrelationships and major clades of the Ericales. Plant Systematics and Evolution 184: 207-231.
2. BATRA, L. R. 1991. World species of Monilinia (Fungi): Their ecology, biosystematics and control. Mycologia Memoir no. 16, J. Cramer, Berlin/Stuttgart.
3. BATRA, S. W. T. 1991. Floral mimicry and insects as vectors of conidia. In L. R. Batra [ed.], World species of Monilinia (Fungi): their ecology, biosystematics and control, Chapt. 4, 93-97. Mycologia Memoir no. 16, J. Cramer, Berlin/Stuttgart.
4. BAURA, G., T. M. SZARO, AND T. D. BRUNS. 1992. Gastrosuillus laricinus is a recent derivative of Siiillus grevillei: molecular evidence. Mycologia 84: 592-597.
5. BOUDIER, M. 1907. Histoire et classification des Discomycètes d'Europe. Paris.
6. BREMER, K. 1988. The limits of amino acid sequence data in angiosperm phylogenetic reconstruction. Evolution 42: 795-803.
7. BRUNEL, D. 1992. An alternative rapid method of plant DNA extraction for PCR analyses. Nucleic Acids Research 20: 4676.
8. BRUNS, T. D., R. FOGEL, T. J. WHITE, AND J. D. PALMER. 1989. Accelerated evolution of a false-truffle from a mushroom ancestor. Nature 339: 140-142.
9. BUCHWALD, N. F. 1987. (1979). Sclerotiniaceae Daniae. En floristisksystematisk oversigt over de i Danmark fundne Knoldbgersvampe. D. del. Friesia 11: 287-328.
10. BULTMAN, T. L. 1995. Mutualistic and parasitic interactions between Phorbia flies and Epichloe: convergence between a fungus and entomophilous angiosperms. Canadian Journal of Botany 73 (Supplement 1): S1343-S1348.
11. CAMPBELL, C. S., M. J. DONOGHUE, B.' G. BALDWIN, AND M. E WOJCIE-
12. CHOWSKI. 1995. Phylogenetic relationships in Maloideae (Rosaceae): evidence from sequences of the internal transcribed spacers of nuclear ribosomal DNA and its congruence with morphology. American Journal of Botany 82: 903-918.
13. CARBONE, I., AND L. M. KOHN. 1993. Ribosomal DNA sequence divergence within internal transcribed spacer 1 of the Sclerotiniaceae. Mycologia 85: 415-427.
14. CULLINGS, K. 1994. Molecular phylogeny of the Monotropoideae (Ericaceae) with a note on the placement of the Pyroloideae. Journal of Evolutionary Biology 7: 501-516.
15. AND T. D. BRUNS. 1992. Phylogenetic origin of the Monotropoideae inferred from partial 28S ribosomal RNA gene sequences. Canadian Journal of Botany 70: 1703-1708.
16. DE RIJK, P., Y. VAN DE PEER, S. CHAPELLE, AND R. DE WäCHTER. 1994. Database on the structure of large ribosomal subunit RNA. Nucleic Acids Research 22: 3495-3501.
17. DONOGHUE, M. J., R. G. OLMSTEAD, J. F. SMITH, AND J. D. PALMER. 1992. Phylogenetic relationships of Dipsacales based on rbcL sequences. Annals of the Missouri Botanical Garden 79: 333-345.
18. ERIKSSON, T. 1995. AutoDecay version 3.0. Distributed by the author. Department of Botany, University of Stockholm, Sweden.
19. FANGAN, B. M., B. STEDJE, O. E. STABBETORP, E. S. JENSEN, AND K. JAKOBSEN. 1994. A general approach for PCR-amplification and sequencing of chloroplast DNA from crude vascular plant and algal tissue. BioTechniques 16: 484-494.
20. FEIBELMAN, T., P. BAYMAN, AND W. G. CIBULA. 1994. Length variation in the internal transcribed spacer of ribosomal DNA in chanterelles. Mycological Research 98: 614-618.
21. FELSENSTEIN, J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Systematic Zoology 27: 401-410.
22. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
23. 1995. PHYL.IP (Phylogeny Inference Package) version 3.57c.
24. Distributed by the author. Department of Genetics, University of
25. Washington, Seattle, WA. GARGAS, A., AND J. W. TAYLOR. 1992. Polymerase chain reaction (PCR)
26. primers for amplifying and sequencing nuclear 18S rDNA from
27. lichenized fungi. Mycologia 84: 589-592.
28. AND 1995. Phylogeny of Discomycetes and early radiations of the apothecial Ascomycotina inferred from SSU rDNA sequence data. Experimental Mycology 19: 7-15.
29. GEORGIEV, O. L, N. NIKOLAEV, A. A. HADJIOLOV, K. G. SKRYABIN, V. M. ZAKHARYEV, AND A. A. BAYEV. 1981. The structures of the yeast ribosomal RNA genes. 4. Complete sequence of the 25S rRNA gene from Saccharomyces cerevisiae. Nucleic Ada's Research 9: 6953-6958.
30. GLCRUM, H. B. 1969. Some fruit inhabiting Sclerotinias in Norway. Friesia 9: 18-28.
31. GUTELL, R. R, B. WEISER, C. R. WOESE, AND H. F. NOLLER. 1985. Comparative anatomy of 16-S-like ribosomal RNA. Progressions in Nucleic Acids Research and Molecular Biology 32: 155-216.
32. HAMBY, R. K., AND E. A. ZIMMER. 1988. Ribosomal RNA sequences for inferring phylogeny within the grass family (Poaceae). Plant Systematics and Evolution 160: 29-37.
33. HEGNAUER, R. 1966. Chemotaxonomie der Pflanzen. Eine Übersicht über die Verbreitung und die systematische Bedeutung der Pflanzenstoffe. Band 6. Dicotyledoneae: Rafflesiaceae-Zygophyllaceae. Birkhäuser, Basel.
34. HILLIS, D. M. 1991. Discriminating between phylogenetic signal and random noise in DNA sequences. In M. Miyamoto and J. Cracraft [eds.], Phylogenetic analysis of DNA sequences, 278-294. Oxford University Press, New York, NY.
35. AND J. P. HUELSENBECK. 1992. Signal, noise, and reliability in molecular phylogenetic analyses. Journal of Heredity 83: 189-195.
36. HOLST-JENSEN, A. 1992. Morphology and rDNA restriction site based phylogeny in the genus Monilinia (Sclerotiniaceae). Master's thesis. University of Oslo, Oslo, Norway.
37. HONEY, E. E. I928. The monilioid species of Sclerotinia, Mycologia 20: 127-157.
38. 1936. North American species of Monilinia. I. Occurrence, grouping, and life-histories. American Journal of Botany 23: 1 DO106.
39. HUELSENBECK, J. P. 1991. Tree-length distribution skewness: an indicator
40. of phylogenetic information. Systematic Zoology 40: 257-270.
41. HULTMAN, T., S. STAHL, E. HORNES, AND M. UHLéN. 1989. Direct solid phase sequencing of genomic and plasmid DNA using magnetic beads as solid support. Nucleic Acids Research 17: 4937-4946.
42. KäLLERSJö, M, J. S. HARRIS, A. G. KLUGE, AND C. BULT. 1992. Skewness and permutation. Cladistics 8: 275-287.
43. KISHINO, H., AND M. HASEGAWA. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. Journal of Molecular Evolution 29: 170-179.
44. MADDISON, D. R. 1991. The discovery and importance of multiple islands of most-parsimonious trees. Systematic Zoology 40: 315-328.
45. MADDISON, W. P., AND D. R. MADDISON. 1993. MacCIade version 3.04: analysis of phylogeny and character evolution. Sinauer, Sunderland, MA.
46. MORGAN, D. R., D. E. SOLTIS, AND K. R. ROBERTSON. 1994. Systematic and evolutionary implications of rbcL sequence variation in Rosaceae. American Journal of Botany 81: 890-903.
47. NAUMOV, N. A. 1964. Flora gribov Leningradskoj oblasti. II. Diskomicety. Moscow/Leningrad.
48. NICKRENT, D. L., AND E. M. STARR. 1994. High rates of nucleotide substitution in nuclear small-subunit (18S) rDNA from holoparasitic flowering plants. Journal of Molecular Evolution 39: 62-70.
49. PENROSE, L. J., J. TARRAN, AND A.-L. WONG. 1976. First record of Sclerotinia laxa Aderh. & Ruhl. in New South Wales: differentiation from S. fructicola (Wint.) Rehm. by cultural characteristics and electrophoresis. Australian Journal of Agricultural Research 27: 547-556.
50. PHIPPS, J. B., K. R. ROBERTSON, J. R. ROHRER, AND P. G. SMITH. 1991. Origins and evolution of subfam. Maloideae (Rosaceae). Systematic Botany 16: 303-332.
51. PYYKKö, M., AND L. HäMET-AHTI. 1980. Sclerotinia pirolae: sclerotial ontogeny and occurrence in Finland. Karstenia 20: 28-32.
52. REYNOLDS, J. E. F. 1989. Martindale, the extrapharmacopaeia, 29th ed, Pharmaceutical Press, London.
53. ROHRER, J. R., K. R. ROBERTSON, AND J. B. PHIPPS, 1991. Variation in structure among fruits of Maloideae (Rosaceae). American Journal of Botany 78: 1617-1635.
54. ROY, B. A. 1993. Floral mimicry by a plant pathogen. Nature 362: 56-58.
55. RUBTSOV, P. M., M. M. MUSAKHANOV, V. M. ZAKHARYEV, A. S. KRAYEV, K. SKRYABIN, AND A. A. BAYEV. 1980. The structure of the yeast ribosomal RNA genes. I. The complete nucleotide sequence of the
56. S ribosomal RNA gene from Saccharomyces cerevisiae. Nucleic Acids Research 8: 5779-5794.
57. SARICH, V. M, AND A. C. WILSON. 1967. Rates of albumin evolution in primates. Proceedings of the National Academy of Sciences, USA 58: 142-148.
58. STEVENS, P. F. 1971. A classification of the Ericaceae: subfamilies and tribes. Journal of the Linnean Society of Botany 64: 1-53.
59. SWOFFORD, D. L. 1993. PAUP (Phylogenetic analysis using parsimony) version 3.1.1. Distributed by the Illinois Natural History Survey, Champaign, IL.
60. WEISS, F. 1940. Oviilinia, a new generic segregate from Sclerotinia. Phytopathology 30: 236-244.
61. WHETZEL, H. H. 1945. A synopsis of the genera and species of the Sclerotiniaceae, a family of stromatic inoperculate discomycetes. Mycologia 37: 648-714.
62. WHITE, T. J., T. BRUNS, S. LEE, AND J. TAYLOR. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In M. A. Innis, D. H. Gelfand, J. J. Sninsky, and T. J. White [eds.], PCR protocols: a guide to methods and applications, chapt. 38, 315-322. Academic Press, San Diego, CA.
63. WlLMOTTE, A., Y. VAN DE PEER, A. GORIS, S. CHAPELLE, R. DE BAERE, B. NELISSEN, J.-M. NEEFS, G. L. HENNEBERT, AND R. DE WäCHTER. 1993. Evolutionary relationships among higher fungi inferred from small ribosomal subunit RNA sequence analysis. Systematic and Applied Microbiology 16: 436-444.
64. WORONIN, M. 1888. Über die Sclerotienkrankheit der Vaccinieen-Beeren. Entwickelungsgeschichte der diese Krankheit verursachenden Sclerotinien. Mémoires de l'Académie impériale des sciences de St.-Pétersbourg, ser. 7, vol. 36, 6: 1-49.
65. 1895. Die Sclerotienkrankheit der gemeinen Traubenkirsche und der Eberesche. (Sclerotinia padi und Sclerotinia aucitpariae). Mémoires de l'Académie impériale des sciences de St.-Pétersbourg, ser. 8, vol. 2, 1: 1-27.
66. 1900. Über Sclerotinia cinerea und Sclerotinia fnictigena. Mémoires de l'Académie impériale des sciences de St.-Pétersbourg, ser. 8, vol. 10, 5: 1-38.
67. AND S. NAWASCHIN. 1896. Sclerotinia heteroica. Zeitschrift für Pflanzenkrankheiten 6: 129-140, 199-207.
68. Wir, C.-I., AND W.-H. Li. 1985. Evidence for higher rates of nucleotide Substitution in rodents than in man. Proceedings of the National Academy of Sciences. USA 82: 1741-1745.
69. ZAMBINO, P. J., AND L. J. SZABO. 1993. Phylogenetic relationships of selected cereal and grass rusts based on rDNA sequence analysis. Mycologia 85: 401-414.
70. ZOLAN, M. E., AND P. J. PUKKILA. 1986. Inheritance of DNA methylation in Coprinus cinereus. Molecular and Cellular Biology 6: 195-200.