DNA-drug refinement: A comparison of the programs NUCLSQ, PROLSQ, SHELXL93 and X-PLOR, using the low-temperature d(TGATCA)-nogalamycin structure

Acta Crystallographica Section D: Biological Crystallography

Volumn 52, Issue 2, 1996, Pages 299-314

  Schuerman, Geertrui S ^a   Smith, Camilla K ^b   Turkenburg, Johan P ^b   Dettmar, Anne N ^b   Van Meervelt, Luc ^a   Moore, Madeleine H ^b  

^a UNIVERSITY OF LEUVEN   (Belgium)

^b UNIVERSITY OF YORK   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0000936179     PISSN: 09074449     EISSN: None     Source Type: Journal    
DOI: 10.1107/S0907444995012261     Document Type: Article

References (36)

1. Allen, F. H., Kennard, O. & Taylor, R. (1983). Acc. Chem. Res. 16, 146-153.
2. Arora, S. K. (1983). J. Am. Chem. Soc. 105, 1328-1332.
3. Babcock, M. S. & Olson, W. K. (1993). Computation of Biomolecular Structures: Achievements, Problems, and Perspectives, edited by D. M. Soumpasis & T. M. Jovin, pp. 65-85. Heidelberg: Springer-Verlag.
4. Berman, H. M., Olson, W. K., Beveridge, D. L., Westbrook, J., Gelbin, A., Deveny, T., Hsiek, S.-H., Srinivasan, A. R. & Schneider, B. (1992). Biophys. J. 63, 751-759.
5. Bernstein, F. C., Koetzle, T. F., Williams, G. J. B., Meyer, E. F. Jr, Brice, M. D., Rodgers, J. R., Kennard, O., Shimanouchi, T. & Tasumi, M. (1977). J. Mol. Biol. 112, 535-542.
6. Brünger, A. T. (1992a). X-PLOR. Version 3.1. A System for X-ray Crystallography and NMR. Yale University New Haven, CT, USA.
7. Brünger, A. T. (1992b). Nature (London), 355, 472-474.
8. Brünger, A. T. (1993). Acta Cryst. D49, 24-36.
9. Brünger, A. T., Krukowski, A. & Erickson, J. W. (1990) Acta. Cryst. A46, 585-593.
10. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
11. Driessen, H., Haneef, M. I. J., Harris, G. W., Howlin, G., Khan G. & Moss, D. S. (1989). J. Appl. Cryst. 22, 510-516.
12. Egli, M., Williams, L. D., Frederick, C. A. & Rich, A. (1991). Biochemistry, 30, 1364-1372.
13. EMBO Cambridge Workshop (1989). EMBO J. 8, 1-4.
14. Gao, Y.-G., Laiw, Y.-C., Robinson, H. & Wang, A. H.-J. (1990). Biochemistry, 29, 10307-10316.
15. Gewirth, D. T. & Sigler, P. B. (1995). Nature Struct. Biol. 2, 386-394.
16. Hahn, M. & Heinemann, U. (1993). Acta Cryst. D49, 468-477.
17. Hendrickson, W. A. & Konnert, J. H. (1981). In Biomolecular Structure, Conformation, Function and Evolution, edited by R. Srinivasan, Vol. 1, pp. 43-57. Oxford: Pergamon Press.
18. Jochimiak, A., Haran, T. E. & Sigler, P. B. (1994). EMBO J. 13, 367.
19. Jones, T. A. (1978). J. Appl. Cryst. 11, 268-272.
20. Jones, T. A. & Cambillau, C. (1989). Silicon Graphics Geometry Partners Directory, Vol. 89. Silicon Graphics Inc., Mountain View, CA, USA.
21. Kleywegt, G. J. (1995). Jnt CCP4 ESF-EACBM Newslett. Protein Crystallogr. 31, 45-50.
22. Kopka, M. L., Fratini, A V., Drew, H. R. & Dickerson, R. E. (1983). J. Mol. Biol. 163, 129-146.
23. Langlois d'Estaintot, B., Gallois, B., Brown, T. & Hunter, W. N. (1992). Nucleic Acids Res. 20, 3561-3566.
24. Langridge, R., Marvin, D. A., Seeds, W. E., Wilson, H. R., Hooper, C. W., Wilkins, M. H. F. & Hamilton, L. D. (1960). J. Mol. Biol. 2, 38-64.
25. Liaw, Y.-C., Gao, Y.-G., Robinson, H., van der Marel, G. A., van Boom, J. H. & Wang, A. H.-J. (1989). Biochemistry, 28, 9913-9918.
26. Luzzati, V. (1952). Acta Cryst. 5, 802-810.
27. Otwinowski, Z. (1991). DENZO. A Film Processing Program for Macromolecular Crystallography. Yale University, New Haven, CT, USA.
28. Otwinowski, Z., Schevitz., R. W., Zhang, R.-G., Lawson, C. L. Joachimiak, A., Marmorstein, R. Q., Luisi, B. F. & Sigler, P. B. (1988). Nature (London), 335, 321-329.
29. Privé, G. G., Heinemann, U., Chandrasegaran, S., Kan, L-S., Kopka, M. L. & Dickerson, R. E. (1987). Science, 238, 498-504.
30. Read, R. J. (1986). Acta Cryst. A42, 140-149.
31. Saenger, W., Hunter, W. N. & Kennard, O. (1986). Nature (London), 324, 385-388.
32. Sheldrick, G. M. (1993). SHELXL93. Program for Crystal Structure Refinement. University of Göttingen, Germany.
33. Smith, C. K., Davies, G. J., Dodson, E. J. & Moore, M. H. (1995). Biochemistry, 34, 415-425.
34. Taylor, R. & Kennard, O. (1982). J. Am. Chem. Soc. 104, 3209-3212.
35. Westhof, E., Dumas, P. & Moras, D. (1985). J. Mol. Biol. 184, 119-145.
36. Williams, L. D., Egli, M., Gao, Q., Bash, P., van der Marel, G. A., van Boom, J. H., Rich, A. & Frederick, C. A. (1990). Proc. Natl Acad. Sci. USA, 87, 2225-2229.