Virtual reality in chemistry

Journal of Molecular Modeling

Volumn 3, Issue 9, 1997, Pages 386-402

  Ihlenfeldt, Wolf D ^a  

^a UNIVERSITY OF ERLANGEN NUREMBERG   (Germany)

Author keywords

Computer Graphics; Data Mining; Databases; Document Navigation; Molecular Modeling; Virtual Reality; Visualization

Indexed keywords

EID: 0000308654     PISSN: 16102940     EISSN: None     Source Type: Journal    
DOI: 10.1007/s008940050056     Document Type: Review

References (97)

1. Bryson, S. Comm. ACM 1996, 39, 5/63
2. Hartman, J.; Wernecke, J. The VRML 2.0 Handbook, Silicon Graphics, 1996
3. http://vag.vrml.org/VRML2.0/FINAL/
4. http://www.vrml.org
5. http://askhp.ask.uni-karlsruhe.de/∼doc/vrml/fokus/pages/bro_page.htm l
6. http://www.sgi.com/Technology/Inventor.html
7. Casher, O.; Leach, C.; Page, C. S.; Rzepa, H. S. Theochem 1996, 368, 49; see also http://chemcomm.clic.ac.uk/VRML/
8. Vollhardt, H.; Brickmann, J. In Proc. Pacific Symp. on Biocomputing 96; Hunter, L., Klein, T. E., Eds.; World Scientific: Singapore, 1996; p. 663
9. Vollhard, H.; Henn, C.; Techner, M.; Brickmann, J. J. Mol. Graphics 1995, 13, 368; see also: http://ws05.pc.chemie.th-darmstadt.de/vrml/
10. The WWW Chemical Structures Database at http://schiele.organik.uni-erlangen.de/services/ webmol.html and the JST structure database http:// fact.jst.go.jp/cr-vrml.html
11. http://schiele.organik.uni-erlangen.de/services/ vrml.html
12. Roehl, B.; Couch, J.; Reed-Ballreich, C.; Rohaly, T.; Brown, G. Late Night VRML 2.0 with Java; Ziff-Davis: Emeryville, 1997
13. http://vrml.sgi.com/moving-worlds/spec/vrmlscript.html
14. http://home.netscape.com/eng/mozilla/3.0/handbook/ javascript/
15. http://www.ecma.ch/ecma-262.html
16. http://vrml.sgi.com/spec/moving-worlds/spec/part1/ java.html
17. http://java.sun.com/products/java-media/3D/
18. http://ws05.pc.chemie.th-darmstadt.de/vrml/vib/
19. http://www.pc.chemie.th-darmstadt.de/java/
20. Richardson, D. C.; Richardson, J. S. Protein Sci. 1992, 1, 3; see also http://www.prosci.org/
21. Humphrey, W.; Dalke, A.; Schulten, K. J. Molec. Graphics 1996, 14, 33; see also: http://www.ks.uiuc.edu/Research/vmd/
22. http://www.mdli.com/chemscape/chime/chime.html
23. Bowie, J. E.; Olson. J. E. Data Visualization in Molecular Science: Tools for Insight and Innovation; AW Computer & Engineering: 1995
24. Foley, J.; van Dam, A.; Hughes, J. Computer Graphics: Principles and Practice; Addison Wesley: 1995
25. Watkins, C. D.; Mallete, V. P. Stereogram Programming Techniques; Charles River Media: 1995
26. http://www.sirds.com/ see http://schiele.organik.uni-erlangen.de/gallery.html for a chemical SIRD
27. http://mofet.macam98.ac.il/∼anna/compgraf.html
28. http://www.ncsa.uiuc.edu/VR/cavernus/
29. http://viswiz.gmd.de
30. http://evlweb.eecs.uic.edu/pape/CAVE/idesk/
31. Clifton, T. L.; Wefer, F. L. IEEE Comput. Graphics and Applications 1993, 13, 4/57; see also: http:// www.elec.canterbury.ac.nz/labs/graphics/av_vol.html
32. Dallas, W. J. Computer Generated Holograms in The Computer in Optical Research,Topics in applied Physics 41; Springer: New York, 1980; p. 291.
33. Leseberg, D.; Bryngdahl, O. Applied Optics 1984, 23, 2441.
34. Hilaire, P. S.; Benton, S. A.; Lucente, M.; Jepsen, M. L.; Kollin, J.; Yoshikawa, H.; Underkoffer, J. Electronic Display System for Computational Holography in SPIE Proc. 1212, Practical Holography IV; Benton, S. A. Ed.;, Soc. Photo-Opt. Instr. Engrs: Bellingham, 1990; p. 174 Full text at http://www.media.mit.edu/groups/spi/pierre/ spie90.ps.Z
35. Huang, T. S.; Pavlovics, V. I. Proc. Int. Workshop on Automatic Face- and Gesture Recognition 1995, 73.
36. Maggioni, C.; Kämmerer, B. Proc. Workshop on Computer Vision in Man-Machine Interface; Cippola. R. Ed.; Cambridge University: 1996, p. 34; see also: http://www.bath.ac.uk/Centres/MEDIA/SIEMENS/ GestureComputerMailFrame.html
37. Mulder, A. Hand Centered Studies of Human Movement Project Technical Report 94-1, Simon Fraser University, 1994; available in full text as ftp://fas.sfu.ca/ pub/cs/graphics/vmi/HMTT.pub.ps.Z
38. Clay, S. R. IEEE Comput. Graphics and Appl. 1996, 16, 2/31
39. Rabiner, L.; Juang, B. Fundamentals of Speech Recognition; Prentice Hall: New Jersey, 1993.
40. Begault, D. R. 3-D Sound for Virtual Reality and Multimedia; Ap Professional: 1994
41. Burdea, G. C. Force and Touch Feedback for Virtual Reality; Wiley: 1996.
42. http://www.cogsci.kun.nl/∼miami/taxonomy/node30.html
43. Virtual Environments and Scientific Visualization; Göbel, M.; David, J.; Slavik, P.; van Wijk, J. J. Eds.; Springer: New York, 1996.
44. Wood, F.; Brown, D.; Amidon, R. A.; Alferness, J.; Joseph, B.; Gillilan, R. E.; Faerman, C. IEEE Comput. Graphics and Appl. 1996, 16, 4/72; see also http://www.tc.cornell.edu/Visualization/Staff/richard/ NIH/Faerman/Chagas.html
45. Akkiraju, N.; Edelsbrunner, H.; Fu, P.; Qian, J. IEEE Comput. Graphics and Appl. 1996, 16, 4/58
46. Disz, T.; Papka, M.; Pellegrino, M.; Stevens, R.; Taylor, V. Proc. 1995 Simulation Multiconference Symposium, Society for Computer Simulation; Phoenix: 1995, p. 483.
47. Lent, G. E.; Rowlan, J.; Bash, P.; Cruz-Neira, C. 223. SIGGRAPH Visual Proceedings; Computer Graphics Annual Conference Series, 1994; p. 223.
48. Cruz-Neira, C.; Sandin, D. J.; DeFanti, T. A. Proc. SIGGRAPH 93; ACM: New York, 1993; p. 135.
49. http://www.icemt.iastate.edu/Projects/C2/html/ molecule.html
50. Cruz-Neira, C.; Bash, P. in Proc. Workshop on Simulation and Interaction in Virtual Environments, digital proceeedings only at http://www.cs.uiowa.edu/∼cremer/ sive95/.sive-sessions.html, 1995; full text at http:// www.es.uiowa.edu/∼cremer/,sive-abstracts/cruz-neira-bash.ps.Z
51. http://www/mcs.anl.gov/home/levine/DOCKING/ index.html
52. Sharma, R.; Huang, T. S.; Pavlovic, V. I.; Schulten, K.; Dalke, A.; Phillips, J.; Zeller, M.; Humphrey, W.; Zhao, Y.; Lo, Z.; Chu, S. Proc, 13th ICPR 96 1996, 964.
53. Drees, R. C.; Pleiss, J.; Roller, D.; Schmid, R. D. in Computer Science and Biology, Proceedings of the German Conference on Bioinformatics (GCB'96); Hofestädt, R.; Lengauer, T.; Löffler, M.; Schomburg, D. Eds.; Univ. Leipzig, 1996, p. 190; see also http:// vr.iao.fhg.de/vr/projects/Himm/OVERVIEW-en.html
54. http://www.virtual.gmu.edu/pauling.htm
55. Surles, M.; Richardson, J.; Richardson, D.; Brooks, F. Protein Science 1994, 3, 198.
56. Surles, M. Network Science 1995, 1, 2/2; see also: http://www.awod.com/netsci/Science/Compchem/ feature5.html
57. http://www.intsim.com
58. Pirolli, P.; Schank, P.; Hearst, M.; Diehl, C. Proc. ACM SIGCHI Conf. on Human Factors in Computing Systems; ACM: New York, 1996; full-text electronic proceedings at http://www.acm.org/sigchi/chi96/proceedings/
59. Pirolli, P.; Pitkow, J.; Rao, R. Proc. ACM SIGCHI Conf. on Human Factors in Computing Systems; ACM: New York, 1996; full-text electronic proceedings at http:// www.acm.org/sigchi/chi96/proceedings/
60. see for example the Excite WWW search engine, http:/ /www.excite.com
61. Rao, R. IEEE Comput. Graphics and Appl. 1997, 17,71.
62. Card, S. K.; Robertson, G. G.; Mackinlay, J. D. Proc. ACM SIGCHI Conf. on Human Factors in Computing Systems; ACM: New York, 1991, p. 181.
63. Card, S. K.; Robertson, G. G.; York, W. Proc. ACM SIGCHI Conf. on Human Factors in Computing Systems; ACM: New York, 1996; full-text electronic proceedings at http://www.acm.org/sigchi/chi96/proceedings/
64. Angus, I. G. IEEE Comput. Graphics and Appl. 1996, 16, 3/6.
65. Rapley, M. H.; Kennedy, J. B. Interfaces to Database Systems - Lancaster 1994; Sawyer, P., Ed.; Springer: 1995, p. 143
66. Ahlberg, C.; Williamson, C.; Schneiderman, B. Proc. SIGCHI 92; ACM: New York, 1992; p. 619.
67. Caterci, T. IEEE Comput. Graphics and Appl. 1996, 16, 2/63.
68. Boyle. J.; Fothergill, J. E.; Gray, P. M. D. Design of a 3D User Interface to a Database in Interfaces to Database Systems - Lancaster 1994; Sawyer, P. Ed.; Springer: 1995, p. 127.
69. Rapley, M. H.: Kennedy, J. B. Three Dimensional Interface for an Object Oriented Database in Interfaces to Database Systems - Lancaster 1994; Sawyer, P., Ed.; Springer,: 1995; p. 143.
70. Hemmje, M.; Kunkel, C.; Willet, A. Proc. ACM SIGIR 94; ACM: New York, 1994; full text at ftp://ftp.darmstadt.gmd.de/pub/VISIT/papers/hemmje/ SIGIR94.ps; see also: http://www-cui.darmstadt.gmd.de/visit/Activities/Lyberworld/
71. http://este.darmstadt.gmd.de:5000/dimsys/docking_d/ home.html
72. Hemm, K; Aberer, K.; Hendlich, M. Proc. Int. Conf. on Intell. Systems in Mol. Biology 95 (ISMB 95), Cambridge 1995; full text at ftp://ftp.darmstadt.gmd.de/pub/ dimsys/reports/P-95-13.ps.Z; see also http://www-relibase.darmstadt.gmd.de/gmd/home.html
73. Benford, S. Virtual Environments for Data Sharing and Visualization - Populated Information Terrains in Interfaces to Database Systems - Lancaster 1994; Sawyer, P., Ed.; Springer: 1995; p. 168
74. Card, S. K. IEEE Comput. Graphics and Appl. 1996, 16, 2/63.
75. Spoerri, A. Visual Tools for Information Retrieval in Proc. IEEE Symp. on Visual Languages; IEEE CS: Los Alamitos, 1993; p. 160.
76. Fayyad, U.; Haussler, D.; Stolorz, P. Comm. ACM 1996, 39, 11/51.
77. Becker, B. G. IEEE Comput. Graphics and Appl. 1997, 17, 75.
78. Johnson, A. Fotohui, F. Interactions 1995, 2, 34; see also: http://evlweb.eecs.uiuc.edu/aej/AndySand.html
79. van Teylingen, R.; Ribarsky, W.; van der Mast, C. IEEE Transactions on Visualization and Comput. Graphics 1997, 3, 1/65; see also: http://www.cc.gatech.edu/scivis/ projects/ve/ve.html
80. Kouzes, R.; Myers, J. D.; Wulf, W. A. IEEE Computer 1996, 29, 8/40.
81. Pang, A.; Wittenbrink, C. IEEE Comput. Graphics and Appl. 1997, 17, 2/32.
82. Casher, O.; Rzepa, H. S. J. Mol. Graphics 1995, 13, 268; full text online at http://www.ch.ic.ac.uk/talks/ acs/anaheim.html
83. Casher, O.; Rzepa, H. S. Computer Graphics 1995, 29, 52; full text online at http://www.ch.ic.ac.uk/rzepa/CG/ CG.html
84. http://www-europe.sgi.com/ChemBio/ Molecularlnventor/users.html
85. Krieger, J. H. Chem. Eng. News 1996, 4, 22; full text at http://pubs.acs.org/hotartcl/cenear/960422/ genomic.html
86. http://www-itg.gov/∼deba/ALS.DCEE/
87. http://www.emsl.pnl.gov:2080/docs/collab/ CollabHome.html
88. http://www.itg.lbl.gov/DCEEpage/ DCEE_Overview.html
89. Disz, T. L.; Papka, M. E.; Pellegrino, M.; Stevens, R. Proc. Int. Workshop on High-Performance Computing for Computer Graphics and Visualization; Swansea, 1995.
90. Capin, T. K.; Noser, H.; Thalmann, D. IEEE Comput. Graphics and Appl. 1997, 17, 2/42.
91. Technology overview at http://www.sdsc.edu/tmf/ Sig96Notes/RpForSciVis.html
92. Olson, A. J.; Taylor, P.; Belew, R. K.; Ten Eyck, L.; Bailey, M., Gather/Scatter 1996, 12, 3; see also: http:/ /www.sdsc.edu/GatherScatter/GSummer96/olson.htm
93. Taylor, R. M.; Robinett, W.; Chi, V. L.; Brooks, F. P.; Wright, W. V.; Williams, R. S.; Snyder, E. J. Proc. SIGGRAPH 93; ACM:NewYork, 1993; p. 127; see also: http://www.cs.unc.edu/Research/nano/nanopage.html
94. http://eclectic.ss.uci.edu/∼lin/chem.html
95. Gaither, K.; Moorhead, R.; Nations, S.; Foax, D. IEEE Comput. Graphics and Appl. 1997, 17, 1/16.
96. Risch, J. S.; May, R. A.; Dowson, S. T. IEEE Comput. Graphics and Appl. 1996, 16, 6/33.
97. Cruz-Neira, C.; Leigh, J.; Papka, M.; Barnes, C.; Cohen, S.; Das, S.; Engelman, R.; Hudson, R.; Roy, T.; Siegel, L.; Vasilakis, C.; DeFanti, T. A.; Sandin, D. J. IEEE 1993 Symposium on Research Frontiers in Virtual Reality 1993, 59; see also: http://evlweb.eecs.uic.edu/EVL/ SHOWCASE/cave/vrpapers/report.html