A fast recursive algorithm for molecular dynamics simulation

Journal of Computational Physics

Volumn 106, Issue 2, 1993, Pages 258-268

  Jain, A ^a   Vaidehi, N ^a   Rodriguez, G ^a  

^a CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0000040038     PISSN: 00219991     EISSN: 10902716     Source Type: Journal    
DOI: 10.1016/S0021-9991(83)71106-X     Document Type: Article

References (21)

1. M. Karplus and G. Petsko, Science 347, 631 (1990).
2. C. Brooks, M. Karplus, and B. Pettitt, A Theoretical Perspective of Dynamics, Structure and Thermodynamics (Wiley, New York, 1988).
3. A. Warshel, Computer Simulation of Chemical Reactions in Enzymes and Solutions (Wiley, New York, 1991).
4. K. Gibson and H. Scheraga, J. Comput. Chem. 11 (4), 468 (1990).
5. B. Brooks, R. Bruccoleri, B. Olafson, D. States, S. Swaminathan, and M. Karplus, J. Comput. Chem. 4 (2), 187 (1983).
6. J. Mcammon and S. Harvey, Dynamics of Proteins and Nucleic Acids (Cambridge Univ. Press, Cambridge, 1987).
7. M. Pear and J. Weiner, J. Chem. Phys. 71, 212 (1979).
8. R. Edberg, D. Evans, and G. Morriss, J. Phys. Chem. 84, 6933 (1986).
9. A. Mazur and R. Abagyan, J. Biomol. Struct. Dyn. 6 (4), 815 (1989).
10. A. Mazur, V. Dorofeev, and R. Abagyan, J. Comput. Phys. 92, 261 (1991).
11. J. Dump, J. Phys. Chem. 95 (4), 1817 (1991).
12. J. Perram and H. Petersen, Mol. Phys. 65 (4), 861 (1988).
13. G. Rodriguez, K. Kreutz-Delgado, and A. Jain, Int. J. Rob. Res. 10, 371 (1991).
14. G. Rodriguez, A. Jain, and K. Kreutz-Delgado, J. Astronaut. Sci. 40, 27 (1992).
15. B. D. O. Anderson and J. B. Moore, Optimal Filtering (Prentice-Hall, Englewood Cliffs, NJ, 1979).
16. J. Chandrasekar, S. Smith, and W. Jorgensen, J. Am. Chem. Soc. 107, 155 (1985).
17. J. Hwang, G. King, S. Creighton, and A. Warshel, J. Am. Chem. Soc. 110, 5297 (1988).
18. N. Vaidehi, T. A. Wesolowski, and A. Warshel, J. Chem. Phys. 97, 4264 (1992).
19. L. Meirovitch, Methods of Analytical Dynamics (McGraw-Hill, New York, 1970).
20. G. Rodriguez, IEEE J. Rob. Automat. 3, 624 (1987).
21. A. Jain, J. Guidance Control Dyn. 14, 531 (1991).