DNA Replication in the Third Domain (of Life)

Current Protein and Peptide Science

Volumn 1, Issue 2, 2000, Pages 139-154

  Kelman, Zvi ^a  

^a MEMORIAL SLOAN KETTERING CANCER CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEA; EUKARYOTA; PROKARYOTA;

EID: 0000024368     PISSN: 13892037     EISSN: None     Source Type: Journal    
DOI: 10.2174/1389203003381414     Document Type: Article

References (137)

1. Woese, C.R. and Fox, G.E. (1977) Proc. Natl. Acad. Sci. USA, 74, 5088-5090.
2. Woese, C.R. (1993) in: The Biochemistry of archaea (archaebacteria), pp. VII-XXIX (Kates, M., Kushner, D. and Matheson, A.T., Eds.) Elsevier, Amsterdam ; New York.
3. Woese, C.R., Kandler, O. and Wheelis, M.L. (1990) Proc. Natl. Acad. Sci. USA, 87, 4576-4579.
4. Reeve, J.N. (1999) J. Bacteriol., 181, 3613-3617.
5. Whitman, W.B., Pfeifer, F., Blum, P. and Klein, A. (1999) Genetics, 152, 1245-1248.
6. Barns, S.M., Delwiche, C.F., Palmer, J.D. and Pace, N.R. (1996) Proc. Natl. Acad. Sci. USA, 93, 9188-9193.
7. Bult, C.J. et al. (1996) Science, 273, 1058-1073.
8. Klenk, H.P. et al. (1997) Nature, 390, 364-370.
9. Smith, D.R. et al. (1997) J. Bacteriol., 179, 7135-7155.
10. Kawarabayasi, Y. et al. (1998) DNA Res., 5, 55-76.
11. Kawarabayasi, Y. et al. (1999) DNA Res., 6, 83-101, 145-152.
12. Soppa, J. (1999) Mol. Microbiol., 31, 1295-1305.
13. Koonin, E.V., Mushegian, A.R., Galperin, M.Y. and Walker, D.R. (1997) Mol. Microbiol., 25, 619-637.
14. Brown, J.R. and Doolittle, W.F. (1997) Microbiol Mol. Biol. Rev., 61, 456-502.
15. Gupta, R.S. (1998) Mol. Microbiol., 29, 695-707.
16. Gupta, R.S. (1998) Microbiol Mol. Biol. Rev., 62, 1435-1491.
17. Dennis, P.P. (1997) Cell, 89, 1007-1010.
18. Kelman, Z. and O'Donnell, M. (1994) Curr. Opin. Genet. Dev., 4, 185-195.
19. Kornberg, A. and Baker, T.A. (1992) , pp. xiv, 931 W.H. Freeman, New York.
20. Stillman, B. (1994) Cell, 78, 725-728.
21. Marians, K.J. (1992) Annu. Rev. Biochem., 61, 673-719.
22. DePamphilis, M.L. (1998) J. Cell Biochem. Suppl., 31, 8-17.
23. Boulikas, T. (1996) J. Cell Biochem., 60, 297-316.
24. Pfeifer, F. and Ghahraman, P. (1993) Mol. Gen. Genet., 238, 193-200.
25. Ng, W.L. and DasSarma, S. (1993) J. Bacteriol., 175, 4584-4596.
26. Tumbula, D.L., Bowen, T.L. and Whitman, W.B. (1997) J. Bacteriol., 179, 2976-2986.
27. Holmes, M.L., Pfeifer, F. and Dyall-Smith, M.L. (1995) Gene, 153, 117-121.
28. Zillig, W., Prangishvilli, D., Schleper, C., Elferink, M., Holz, I., Albers, S., Janekovic, D. and Gotz, D. (1996) FEMS Microbiol. Rev., 18, 225-236.
29. Bernander, R. (1998) Mol. Microbiol., 29, 955-961.
30. Erauso, G., Marsin, S., Benbouzid-Rollet, N., Baucher, M.F., Barbeyron, T., Zivanovic, Y., Prieur, D. and Forterre, P. (1996) J. Bacteriol., 178, 3232-3237.
31. Marsin, S. and Forterre, P. (1998) Mol. Microbiol., 27, 1183-1192.
32. Lobry, J.R. (1996) Mol. Biol. Evol., 13, 660-665.
33. Grigoriev, A. (1998) Nucleic Acids Res., 26, 2286-2290.
34. Salzberg, S.L., Salzberg, A.J., Kerlavage, A.R. and Tomb, J.F. (1998) Gene, 217, 57-67.
35. Rocha, E.P., Danchin, A. and Viari, A. (1999) Mol. Biol. Evol., 16, 1219-1230.
36. Lopez, P., Philippe, H., Myllykallio, H. and Forterre, P. (1999) Mol. Microbiol., 32, 883-886.
37. Dutta, A. and Bell, S.P. (1997) Annu. Rev. Cell Dev. Biol., 13, 293-332.
38. Toone, W.M., Aerne, B.L., Morgan, B.A. and Johnston, L.H. (1997) Annu. Rev. Microbiol., 51, 125-149.
39. Bell, S.P. and Stillman, B. (1992) Nature, 357, 128-134.
40. Hartwell, L.H. (1976) J. Mol. Biol., 104, 803-817.
41. Tye, B.K. (1999) Annu. Rev. Biochem., 68, 649-686.
42. Ishimi, Y., Ichinose, S., Omori, A., Sato, K. and Kimura, H. (1996) J. Biol. Chem., 271, 24115-24122.
43. Ishimi, Y. (1997) J. Biol. Chem., 272, 24508-24513.
44. Lee, J.-K. and Hurwitz, J. (2000), J. Biol. Chem., in press.
45. Chong, J.P.J., Hayashi, M.K., Simon, M.N., Xu, R.M. and Stillman, B. (2000) Proc. Natl. Acad. Sci. USA, 97, 1530-1535.
46. Kelman, Z., Lee, J.-K. and Hurwitz, J. (1999) Proc. Natl. Acad. Sci. USA, 96, 14783-14788.
47. Zuo, S., Bermudez, V.P., Kelman, Z., Zhang, G. and Hurwitz, J. (2000) J. Biol. Chem., in press.
48. Burgers, P.M. and Gerik, K.J. (1998) J. Biol. Chem., 273, 19756-19762.
49. Gerik, K.J., Li, X., Pautz, A. and Burgers, P.M. (1998) J. Biol. Chem., 273, 19747-19755.
50. Yuzhakov, A., Turner, J. and O'Donnell, M. (1996) Cell, 86, 877-886.
51. Kim, S., Dallmann, H.G., McHenry, C.S. and Marians, K.J. (1996) Cell, 84, 643-650.
52. Braithwaite, D.K. and Ito, J. (1993) Nucleic Acids Res., 21, 787-802.
53. Perler, F.B., Kumar, S. and Kong, H. (1996) Adv. Protein Chem., 48, 377-435.
54. Uemori, T., Sato, Y., Kato, I., Doi, H. and Ishino, Y. (1997) Genes Cells, 2, 499-512.
55. Ishino, Y., Komori, K., Cann, I.K. and Koga, Y. (1998) J. Bacteriol., 180, 2232-2236.
56. Edgell, D.R., Klenk, H.P. and Doolittle, W.F. (1997) J. Bacteriol., 179, 2632-2640.
57. Hopfner, K.P., Eichinger, A., Engh, R.A., Laue, F., Ankenbauer, W., Huber, R. and Angerer, B. (1999) Proc. Natl. Acad. Sci. USA, 96, 3600-3605.
58. Zhao, Y., Jeruzalmi, D., Moarefi, I., Leighton, L., Lasken, R. and Kuriyan, J. (1999) Structure, 7, 1189-1199.
59. Takagi, M., Nishioka, M., Kakihara, H., Kitabayashi, M., Inoue, H., Kawakami, B., Oka, M. and Imanaka, T. (1997) Appl. Environ. Microbiol., 63, 4504-4510.
60. Mattila, P., Korpela, J., Tenkanen, T. and Pitkanen, K. (1991) Nucleic Acids Res., 19, 4967-73.
61. Lundberg, K.S., Shoemaker, D.D., Adams, M.W., Short, J.M., Sorge, J.A. and Mathur, E.J. (1991) Gene., 108, 1-6.
62. Hough, D.W. and Danson, M.J. (1999) Cur. Opin. Chem. Biol. 3, 39-46.
63. Nakayama, M. and Kohiyama, M. (1985) Eur. J. Biochem., 152, 293-297.
64. Zabel, H.P., Fisher, H., Holler, E. and Winter, J. (1985) Syst. Appl. Microbiol., 6, 111-118.
65. Rossi, M., Rella, R., Pensa, M., Bartolucci, S., De Rosa, M., Gambacorta, A., Raia, C.A. and Dell'Aversano Orabona, N. (1986) Syst. Appl. Microbiol., 7, 337-341.
66. Forterre, P. and Elie, C. (1993) in: The Biochemistry of archaea (archaebacteria), pp. 325-365 (Kates, M., Kushner, D. and Matheson, A.T., Eds.) Elsevier, Amsterdam ; New York.
67. Forterre, P. et al. (1994) Syst. Appl. Microbiol., 16, 746-758.
68. Uemori, T., Ishino, Y., Doi, H. and Kato, I. (1995) J. Bacteriol., 177, 2164-77.
69. Elie, C., De Recondo, A.M. and Forterre, P. (1989) Eur. J. Biochem., 178, 619-926.
70. Hamal, A., Forterre, P. and Elie, C. (1990) Eur. J. Biochem., 190, 517-521.
71. Klimczak, L.J., Grummt, F. and Burger, K.J. (1985) Nucleic Acids Res., 13, 5269-5282.
72. Klimczak, L.J., Grummt, F. and Burger, K.J. (1986) Biochemistry, 25, 4850-4855.
73. Perler, F.B. (1998) Cell, 92, 1-4.
74. Belfort, M. and Roberts, R.J. (1997) Nucleic Acids Res., 25, 3379-3388.
75. Belfort, M., Reaban, M.E., Coetzee, T. and Dalgaard, J.Z. (1995) J. Bacteriol., 177, 3897-3903.
76. Pietrokovski, S. (1994) Protein Sci., 3, 2340-2350.
77. Pietrokovski, S. (1998) Protein Sci., 7, 64-71.
78. Xu, M.Q., Southworth, M.W., Mersha, F.B., Hornstra, L.J. and Perler, F.B. (1993) Cell, 75, 1371-1377.
79. Perler, F.B. et al. (1992) Proc. Natl. Acad. Sci. USA, 89, 5577-5581.
80. Nishioka, M., Fujiwara, S., Takagi, M. and Imanaka, T. (1998) Nucleic Acids Res., 26, 4409-4412.
81. Niehaus, F., Frey, B. and Antranikian, G. (1997) Gene., 204, 153-158.
82. Wang, T.S., Wong, S.W. and Korn, D. (1989) FASEB, J 3, 14-21.
83. Kelman, Z., Pietrokovski, S. and Hurwitz, J. (1999) J. Biol. Chem., 274, 28751-28761.
84. Wang, J., Sattar, A.K., Wang, C.C., Karam, J.D., Konigsberg, W.H. and Steitz, T.A. (1997) Cell, 89, 1087-1099.
85. Kelman, Z. and Hurwitz, J. (2000) J. Biol. Chem., 275, 7327-7336.
86. De Felice, M., Sensen, C.W., Charlebois, R.L., Rossi, M. and Pisani, F.M. (1999) J. Mol. Biol., 291, 47-57.
87. Cann, I.K., Komori, K., Toh, H., Kanai, S. and Ishino, Y. (1998) Proc. Natl. Acad. Sci. USA, 95, 14250-14255.
88. Ishino, Y. and Cann, I.K. (1998) Genes Genet. Syst., 73, 323-336.
89. Cann, I.K. and Ishino, Y. (1999) Genetics, 152, 1249-1267.
90. Makiniemi, M., Pospiech, H., Kilpelainen, S., Jokela, M., Vihinen, M. and Syvaoja, J.E. (1999) Trends Biochem. Sci., 24, 14-16.
91. Aravind, L. and Koonin, E.V. (1999) Nucleic Acids Res., 27, 1609-1618.
92. Kelman, Z. and O'Donnell, M. (1995) Nucleic Acids Res., 23, 3613-3620.
93. Kuriyan, J. and O'Donnell, M. (1993) J. Mol. Biol., 234, 915-925.
94. Kong, X.P., Onrust, R., O'Donnell, M. and Kuriyan, J. (1992) Cell, 69, 425-437.
95. Krishna, T.S., Kong, X.P., Gary, S., Burgers, P.M. and Kuriyan, J. (1994) Cell, 79, 1233-1243.
96. Gulbis, J.M., Kelman, Z., Hurwitz, J., O'Donnell, M. and Kuriyan, J. (1996) Cell, 87, 297-306.
97. Stukenberg, P.T., Studwell-Vaughan, P.S. and O'Donnell, M. (1991) J. Biol. Chem., 266, 11328-11334.
98. Yao, N. et al. (1996) Genes Cells, 7, 101-113.
99. Kelman, Z. and Hurwitz, J. (1998) Trends Biochem. Sci., 23, 236-238.
100. Kelman, Z. and O'Donnell, M. (1995) Curr. Biol., 5, 814.
101. Cullmann, G., Fien, K., Kobayashi, R. and Stillman, B. (1995) Mol. Cell Biol., 15, 4661-4671.
102. Burgers, P.M. and Yoder, B.L. (1993) J. Biol. Chem., 268, 19923-19926.
103. Meyer, R.R. and Laine, P.S. (1990) Microbiol. Rev., 54, 342-380.
104. Lohman, T.M. and Ferrari, M.E. (1994) Annu. Rev. Biochem., 63, 527-570.
105. Wold, M.S. (1997) Annu. Rev. Biochem., 66, 61-92.
106. Bochkarev, A., Pfuetzner, R.A., Edwards, A.M. and Frappier, L. (1997) Nature, 385, 176-181.
107. Bochkarev, A., Bochkareva, E., Frappier, L. and Edwards, A.M. (1999) EMBO J., 18, 4498-4504.
108. Chedin, F., Seitz, E.M. and Kowalczykowski, S.C. (1998) Trends Biochem. Sci., 23, 273-277.
109. Kelly, T.J., Simancek, P. and Brush, G.S. (1998) Proc. Natl. Acad. Sci. USA, 95, 14634-14639.
110. Yuzhakov, A., Kelman, Z., Hurwitz, J. and O'Donnell, M. (1999) EMBO J., 18, 6189-6199.
111. Wang, J.C. (1996) Annu. Rev. Biochem., 65, 635-692.
112. Forterre, P., Bergerat, A. and Lopez-Garcia, P. (1996) FEMS Microbiol. Rev., 18, 237-248.
113. Kikuchi, A. and Asai, K. (1984) Nature, 309, 677-681.
114. Bouthier de la Tour, C., Portemer, C., Nadal, M., Stetter, K.O., Forterre, P. and Duguet, M. (1990) J. Bacteriol., 172, 6803-6808.
115. Bouthier de la Tour, C., Portemer, C., Huber, R., Forterre, P. and Duguet, M. (1991) J. Bacteriol., 173, 3921-3923.
116. Collin, R.G., Morgan, H.W., Musgrave, D.R. and Daniel, R.M. (1988) FEMS Lett., 55, 235-239.
117. Mirambeau, G., Duguet, M. and Forterre, P. (1984) J. Mol. Biol., 179, 559-563.
118. Confalonieri, F., Elie, C., Nadal, M., Bouthier de La Tour, C., Forterre, P. and Duguet, M. (1993) Proc. Natl. Acad. Sci. USA, 90, 4753-4757.
119. Borges, K.M., Bergerat, A., Bogert, A.M., DiRuggiero, J., Forterre, P. and Robb, F.T. (1997) J. Bacteriol., 179, 1721-1726.
120. Guipaud, O., Marguet, E., Noll, K.M., Bouthier de la Tour, C. and Forterre, P. (1997) Proc. Natl. Acad. Sci. USA, 94, 10606-10611.
121. Krah, R., Kozyavkin, S.A., Slesarev, A.I. and Gellert, M. (1996) Proc. Natl. Acad. Sci. USA, 93, 106-110.
122. Duguet, M. (1997) J. Cell Sci., 110, 1345-1350.
123. Grogan, D.W. (1998) Mol. Microbiol., 28, 1043-1049.
124. Bergerat, A., de Massy, B., Gadelle, D., Varoutas, P.C., Nicolas, A. and Forterre, P. (1997) Nature, 386, 414-417.
125. Kletzin, A. (1992) Nucleic Acids Res., 20, 5389-5396.
126. Sriskanda, V., Kelman, Z., Hurwitz, J. and Shuman, S. (2000) Nucleic Acids Res., in press.
127. Harrington, J.J. and Lieber, M.R. (1994) EMBO J., 13, 1235-1246.
128. Harrington, J.J. and Lieber, M.R. (1994) Genes Dev., 8, 1344-1355.
129. Ishimi, Y., Claude, A., Bullock, P. and Hurwitz, J. (1988) J. Biol. Chem., 263, 19723-19733.
130. Waga, S., Bauer, G. and Stillman, B. (1994) J. Biol. Chem., 269, 10923-10934.
131. Shen, B., Qiu, J., Hosfield, D. and Tainer, J.A. (1998) Trends Biochem. Sci., 23, 171-173.
132. Matsui, E., Kawasaki, S., Ishida, H., Ishikawa, K., Kosugi, Y., Kikuchi, H., Kawarabayashi, Y. and Matsui, I. (1999) J. Biol. Chem., 274, 18297-18309.
133. Hwang, K.Y., Back, K., Kim, H.Y. and Cho, Y. (1998) Nat. Struct. Biol., 5, 707-713.
134. Rao, H.G., Rosenfeld, A. and Wetmur, J.G. (1998) J. Bacteriol., 180, 5406-5412.
135. Hosfield, D.J., Frank, G., Weng, Y., Tainer, J.A. and Shen, B. (1998) J. Biol. Chem., 273, 27154-27161.
136. Hosfield, D.J., Mol, C.D., Shen, B. and Tainer, J.A. (1998) Cell, 95, 135-146.
137. Sandman, K., Pereira, S.L. and Reeve, J.N. (1998) Cell Mol. Life Sci., 54, 1350-1364.